DoriC

RefSeq

NC_005022

DoriC accession number

pORI00000150

OriC length

486 nt

OriC AT content

0.7181

The location of oriC region

3149..473 nt

Browse in NCBI

OriC map

OriC sequences

GTCATTATGAATAAAGCTTGGTTATTTTGGAGTGTCATAGTCTTATATTTTTTTATAAAGTTTTTTGATAAAGTTTTAGATATAAAGCTTTTTGGTTCTATTCAAATATGGCTAGATAATCTCCCTATTCCGATGAAAATACTGTTAACAATAGCATTAGTTTTGTTTTTATTCATTGTATTTCCATATAGAGGAAAACGGTAAAAACGGTAATTAGATATATAAAAGGAGCTGAAAGCTCCGTAAAAAACCTACTCGAAGAGTAGGTTTTTTCTTATCTTGATACTAGTAGGAAATAACTCTCATGCTATTTTTAGGGTTTCGACAGGGTCTAAACCCTTGATACTACTGACTTTTTAGGTAAAAAAATGCCCTTGACTTTTTTCAACGGATCTTTTATAATTTAGTTGTTCAGAAAAAATTATAAAAAGAGAAAAAAGGCAAAGGTATTTTTGTATTTCTTTGTAATTACAGGTAAATTATAAC

AT-rich region

The information of repeat sequences

Motif AAAGGGWMWAAAVGC

Start	P-value		Site
325	5.55e-09	TAGGGTTTCG	ACAGGGTCTAAACCC	TTGATACTAC
196	1.41e-07	ATATAGAGGA	AAACGGTAAAAACGG	TAATTAGATA
225	2.93e-07	TAGATATATA	AAAGGAGCTGAAAGC	TCCGTAAAAA
428	4.48e-07	AAAATTATAA	AAAGAGAAAAAAGGC	AAAGGTATTT

Motif CCTAYTCS

Start	P-value		Site
251	2.86e-06	CCGTAAAAAA	CCTACTCG	AAGAGTAGGT
124	6.69e-06	AGATAATCTC	CCTATTCC	GATGAAAATA

Motif ATAAAGYTT

Start	P-value		Site
82	1.38e-05	AGTTTTAGAT	ATAAAGCTT	TTTGGTTCTA
11	1.38e-05	GTCATTATGA	ATAAAGCTT	GGTTATTTTG
68	5.77e-05	AAGTTTTTTG	ATAAAGTTT	TAGATATAAA
55	5.77e-05	ATATTTTTTT	ATAAAGTTT	TTTGATAAAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000150	100.0	486	0	0	1	486	1	486	0.0	898
pORI00000151	75.277	271	51	14	224	486	2	264	7.51e-27	115
pORI00000108	73.913	276	44	21	224	484	1048	1310	5.89e-18	86
pORI00000107	73.913	276	44	21	224	484	1445	1707	5.89e-18	86
pORI00000001	90.909	55	1	2	248	302	42	92	1.65e-13	71