RefSeq NC_006130
DoriC accession number pORI00000001
OriC length 216 nt
OriC AT content 0.6296
The location of oriC region 578..793 nt
Browse in NCBI
OriC map
OriC sequences
AGTGTACCTCTTTATTTTTAGAGCCCTTTAGGGCTCTTTTGAAACCCTCGAAGAGGGTTTCTTCTTATCTTGATACTAGTAGGAAATAACTCACGGGCAAAAATGAGCCTGAAGACAGCCCTCAAACCCTTGGGGCTATTGGTTTTTTGTAACAAAAAAAGCCGTTTTACTTCTGAAAACTTTCATGTTATAATTTAAGGGCTGAATCTATAAATT
AGTGTACCTCTTTATTTTTAGAGCCCTTTAGGGCTCTTTTGAAACCCTCGAAGAGGGTTTCTTCTTATCTTGATACTAGTAGGAAATAACTCACGGGCAAAAATGAGCCTGAAGACAGCCCTCAAACCCTTGGGGCTATTGGTTTTTTGTAACAAAAAAAGCCGTTTTACTTCTGAAAACTTTCATGTTATAATTTAAGGGCTGAATCTATAAATT
AT-rich region
The information of repeat sequences

Motif ARCCCT

StartP-valueSite
1171.17e-04GCCTGAAGACAGCCCTCAAACCCTTG
221.17e-04TTATTTTTAGAGCCCTTTAGGGCTCT
1253.00e-04ACAGCCCTCAAACCCTTGGGGCTATT
433.00e-04GCTCTTTTGAAACCCTCGAAGAGGGT
1604.17e-04TAACAAAAAAAGCCGTTTTACTTCTG

Motif AGGGCT

StartP-valueSite
1981.17e-04TTATAATTTAAGGGCTGAATCTATAA
301.17e-04AGAGCCCTTTAGGGCTCTTTTGAAAC
1321.92e-04TCAAACCCTTGGGGCTATTGGTTTTT
544.03e-04ACCCTCGAAGAGGGTTTCTTCTTATC

Motif CTGAARAC

StartP-valueSite
1099.91e-06AAAAATGAGCCTGAAGACAGCCCTCAAA
1732.54e-05CGTTTTACTTCTGAAAACTTTCATGTTA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000001 100.0 216 0 0 1 216 1 216 0.0 399
pORI00000108 76.687 163 31 7 58 216 1090 1249 8.97e-18 84
pORI00000107 76.687 163 31 7 58 216 1487 1646 8.97e-18 84
pORI00000296 92.727 55 3 1 38 92 75 128 4.17e-16 79
pORI00000150 90.909 55 1 2 42 92 248 302 6.98e-14 71