DoriC

RefSeq

NC_016109.1

Accession number

NC_016109.1

DoriC accession number

ORI95010934

OriC length

1265 nt

OriC AT content

0.337549

The location of oriC region

4370854..4372118 nt

Browse in NCBI

OriC map

OriC sequences

dnaACTAACAAAACCCCGGGAGGGTCGGGGGCGGCTGCACCGAGTGTCGGGTGAAGCGTCAAAAACCTTGCTGGCAAAGGCAGTTGTCGAGGAGAAGGGGAGTCGGGCCGAGGCGGCCCGGCTCCCCTTCCGCATGCCCGCGGCGTTACCCGGACGAGTGGTCGGCCGTCGGCGCCGTGCACTCGTCCGAGTGCACGCGAGGGCCTTCCGCGGGCCGTCGCGGGCGGTCTGTAGTAGGGACCCGACAAGTCGGGTCGTTCGAACGCGGAGCGGATCCGAACAGCGGCCGACGGGGCCGTCCGGGTGGCGTCCGCGCGGCATCCGGGTGGTGGCCGGATCGGGCCGGTCGACCCGGCCGGCCGCTGTTCGGGGGTGTGGAGGGGCCGGCGGCGGGGCAGGAGTCCGCCCGAAGGACCGCCGCCGGGGCCGGCCGACGCTGCGAACAGGTGCGCAGTGAATCGAACGGTTCGGGCGCGCACCCCTGTTTTCCACAGGAACGGGTGGGTTTTCCCCGTCCACAGGGTGCGCGGGGGCGAGTTATCCAGAGGTTCCTCCACAGGTGGATCGCCGCTACGCTCTTCCGCGCAGGTCAACCCCCTGTGGACTTGTGCACAACAGTTATCCACAGCCTGTGGAGAACTGAGGGCCCGTCAGCCGCTCCACGGAGTTATCCACCGGCTGTCCACAGGATCGGGTGGGTTATCCCCAGGTTGTCCACAGCTCTGTCCACAGTTCGGCAACATCAACTGCCTTGTCAGCCCTGGGTGTGAAAGGCGTCACGTGATGTTGATCGGCGGCGGTGGATAACTCTGGGGATTTCTGTGGATACAGCTGTGGATAACCTGTGGATACTCAGCGTGCCCTGTGGATTACTCTCCGCTGTCCACAGGTGGCCCCGGTTGTCCACAGCCGCCGTCCACAGGACCTGTGGACAAAATCCGGCCGCTGACCTGCGAAAACGGGGTTATCCACGGTATCCACAGGCCCTACTACTACTGCTACACATAGAGAGCTCGGAACTTGATCAACAGTGGGTGCGGCCCGAATCTGTGGACAACCGGGCTCCGACATTTGTTCGGCCCGCTTGAGCCCATCTGCCCCGGCTGTCAGCCGAGTACGTCAGACTGTCCTTCGGCAACCGGAAGCAGGACGGGGCGGAGCTGATCCGCCGAGCGACCGGCCGGGGGCCGCAGAGGATCAGACGATCAACAGCACGGACCGGCGGTACCGGCCGGCCGTGCGGCGACAGCAGCCAGGAGGCGGTTACCGdnaN

dnaaCTAACAAAACCCCGGGAGGGTCGGGGGCGGCTGCACCGAGTGTCGGGTGAAGCGTCAAAAACCTTGCTGGCAAAGGCAGTTGTCGAGGAGAAGGGGAGTCGGGCCGAGGCGGCCCGGCTCCCCTTCCGCATGCCCGCGGCGTTACCCGGACGAGTGGTCGGCCGTCGGCGCCGTGCACTCGTCCGAGTGCACGCGAGGGCCTTCCGCGGGCCGTCGCGGGCGGTCTGTAGTAGGGACCCGACAAGTCGGGTCGTTCGAACGCGGAGCGGATCCGAACAGCGGCCGACGGGGCCGTCCGGGTGGCGTCCGCGCGGCATCCGGGTGGTGGCCGGATCGGGCCGGTCGACCCGGCCGGCCGCTGTTCGGGGGTGTGGAGGGGCCGGCGGCGGGGCAGGAGTCCGCCCGAAGGACCGCCGCCGGGGCCGGCCGACGCTGCGAACAGGTGCGCAGTGAATCGAACGGTTCGGGCGCGCACCCCTGTTTTCCACAGGAACGGGTGGGTTTTCCCCGTCCACAGGGTGCGCGGGGGCGAGTTATCCAGAGGTTCCTCCACAGGTGGATCGCCGCTACGCTCTTCCGCGCAGGTCAACCCCCTGTGGACTTGTGCACAACAGTTATCCACAGCCTGTGGAGAACTGAGGGCCCGTCAGCCGCTCCACGGAGTTATCCACCGGCTGTCCACAGGATCGGGTGGGTTATCCCCAGGTTGTCCACAGCTCTGTCCACAGTTCGGCAACATCAACTGCCTTGTCAGCCCTGGGTGTGAAAGGCGTCACGTGATGTTGATCGGCGGCGGTGGATAACTCTGGGGATTTCTGTGGATACAGCTGTGGATAACCTGTGGATACTCAGCGTGCCCTGTGGATTACTCTCCGCTGTCCACAGGTGGCCCCGGTTGTCCACAGCCGCCGTCCACAGGACCTGTGGACAAAATCCGGCCGCTGACCTGCGAAAACGGGGTTATCCACGGTATCCACAGGCCCTACTACTACTGCTACACATAGAGAGCTCGGAACTTGATCAACAGTGGGTGCGGCCCGAATCTGTGGACAACCGGGCTCCGACATTTGTTCGGCCCGCTTGAGCCCATCTGCCCCGGCTGTCAGCCGAGTACGTCAGACTGTCCTTCGGCAACCGGAAGCAGGACGGGGCGGAGCTGATCCGCCGAGCGACCGGCCGGGGGCCGCAGAGGATCAGACGATCAACAGCACGGACCGGCGGTACCGGCCGGCCGTGCGGCGACAGCAGCCAGGAGGCGGTTACCGdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif RGTTATCCACAGGHTSYNCA

Start	P-value		Site
662	3.26e-11	CGCTCCACGG	AGTTATCCACCGGCTGTCCA	CAGGATCGGG
694	1.03e-10	GGATCGGGTG	GGTTATCCCCAGGTTGTCCA	CAGCTCTGTC
613	2.73e-10	TGTGCACAAC	AGTTATCCACAGCCTGTGGA	GAACTGAGGG
532	7.01e-10	CGCGGGGGCG	AGTTATCCAGAGGTTCCTCC	ACAGGTGGAT
959	9.74e-10	GCGAAAACGG	GGTTATCCACGGTATCCACA	GGCCCTACTA

Motif CTGTGGAYAAC

Start	P-value		Site
828	9.76e-08	GTGGATACAG	CTGTGGATAAC	CTGTGGATAC
1044	3.33e-07	CGGCCCGAAT	CTGTGGACAAC	CGGGCTCCGA
859	4.28e-07	TCAGCGTGCC	CTGTGGATTAC	TCTCCGCTGT
922	5.28e-07	TCCACAGGAC	CTGTGGACAAA	ATCCGGCCGC
794	7.34e-07	TGATCGGCGG	CGGTGGATAAC	TCTGGGGATT

Motif GYTGTCCACAG

Start	P-value		Site
895	1.77e-07	GGTGGCCCCG	GTTGTCCACAG	CCGCCGTCCA
875	5.05e-07	ATTACTCTCC	GCTGTCCACAG	GTGGCCCCGG
480	6.73e-07	GCGCACCCCT	GTTTTCCACAG	GAACGGGTGG
718	9.85e-07	TGTCCACAGC	TCTGTCCACAG	TTCGGCAACA
908	2.04e-06	GTCCACAGCC	GCCGTCCACAG	GACCTGTGGA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI95010934	100.0	1265	0	0	1	1265	1	1265	0.0	2337
ORI96010199	83.108	148	21	4	868	1013	755	900	2.56e-31	132
ORI10010061	86.066	122	13	4	891	1009	332	212	3.32e-30	128