DoriC

RefSeq

NC_016111.1

Accession number

NC_016111.1

DoriC accession number

ORI95010935

OriC length

916 nt

OriC AT content

0.325328

The location of oriC region

3282602..3283517 nt

Browse in NCBI

OriC map

OriC sequences

dnaNCGGAACCGCCTCCTGCTGTTGCTGGCTGTCTGTGCCAGGCCGTCCTGCGGCCTTCTGCGTCCTTACGGCCATCTGCCGGAGAACAGTCTGACGCACACCACCGACAACGGATGCGGTTCCGGGTCAAGCCCGGGCGTCCACCCGAGGGCGGCCCGCGGCTCGGTTGTGCACAGGCCCCACTTCGATCTTGGCTTCCCGGACTCTATGTGTAGTCGTAGTAATAGGGGTTGTGGATACCGTGGATAACCGGTTCCGCCGCAGGTCAGCCCAGGTTTTTTATCCACCGGGCCTGTGGGTGGCGGCGGTGGACAACCCGGGTCCGCTGTGGACAGCCGGAAGTTGTGCACACCCCATACACAGGGAGAGGGCAGTTCTCCCCATCGTTGTCCCCAGGAATACCCAGGTTCTCCCCAGCCCAACCCACCCCCTGGGTGTGACGCCTTTCACTCCATCCGGCGATGGGGGGTGGCGAGTTGCCGAACAGTGGACAGCGCTGTGGAGAAGCTGTGGGTAACCGCCCGGACCCTGTGGGCAGCCGGTGGACAACGCTCGGCGCGGGTTGTGGGCGAAGTGGTTGTCCACAGGCTGTGGAGAACCTTTTCCCACAATTCCACACCCCGCTGACCTGCGATGATCCTTCCGTCGCCATCCCCCTTGTGGAGGGGGTCGGGACAACTTCGTCCTCCCCAGCCTGTGGATGGCGGATCGGCGGCGAACCTGTGGAGCAGTGTGCCGCCGGAGGGTGAATTCGAACAGCGGGTGTGGACGTGTCGGGGCGGCGGAACGGGCGCGGACGGCCCGGCCCTCCGGGCGCGCACGGCGAGGAGGACGCCGCAGGCCCCCGGAAGACGCCTTCCGGGGGCCTGCGGGGACGCGTACGGGGCCCGTGGAGCCGGGGACGGGGCCGTTGCGGCGGdnaA

dnanCGGAACCGCCTCCTGCTGTTGCTGGCTGTCTGTGCCAGGCCGTCCTGCGGCCTTCTGCGTCCTTACGGCCATCTGCCGGAGAACAGTCTGACGCACACCACCGACAACGGATGCGGTTCCGGGTCAAGCCCGGGCGTCCACCCGAGGGCGGCCCGCGGCTCGGTTGTGCACAGGCCCCACTTCGATCTTGGCTTCCCGGACTCTATGTGTAGTCGTAGTAATAGGGGTTGTGGATACCGTGGATAACCGGTTCCGCCGCAGGTCAGCCCAGGTTTTTTATCCACCGGGCCTGTGGGTGGCGGCGGTGGACAACCCGGGTCCGCTGTGGACAGCCGGAAGTTGTGCACACCCCATACACAGGGAGAGGGCAGTTCTCCCCATCGTTGTCCCCAGGAATACCCAGGTTCTCCCCAGCCCAACCCACCCCCTGGGTGTGACGCCTTTCACTCCATCCGGCGATGGGGGGTGGCGAGTTGCCGAACAGTGGACAGCGCTGTGGAGAAGCTGTGGGTAACCGCCCGGACCCTGTGGGCAGCCGGTGGACAACGCTCGGCGCGGGTTGTGGGCGAAGTGGTTGTCCACAGGCTGTGGAGAACCTTTTCCCACAATTCCACACCCCGCTGACCTGCGATGATCCTTCCGTCGCCATCCCCCTTGTGGAGGGGGTCGGGACAACTTCGTCCTCCCCAGCCTGTGGATGGCGGATCGGCGGCGAACCTGTGGAGCAGTGTGCCGCCGGAGGGTGAATTCGAACAGCGGGTGTGGACGTGTCGGGGCGGCGGAACGGGCGCGGACGGCCCGGCCCTCCGGGCGCGCACGGCGAGGAGGACGCCGCAGGCCCCCGGAAGACGCCTTCCGGGGGCCTGCGGGGACGCGTACGGGGCCCGTGGAGCCGGGGACGGGGCCGTTGCGGCGGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TGTGBRSAGGCBGTGGABAAC

Start	P-value		Site
495	1.18e-10	TGGACAGCGC	TGTGGAGAAGCTGTGGGTAAC	CGCCCGGACC
527	3.03e-10	GCCCGGACCC	TGTGGGCAGCCGGTGGACAAC	GCTCGGCGCG
576	4.85e-10	GCGAAGTGGT	TGTCCACAGGCTGTGGAGAAC	CTTTTCCCAC
227	1.23e-09	AGTAATAGGG	GTTGTGGATACCGTGGATAAC	CGGTTCCGCC
293	2.52e-09	ACCGGGCCTG	TGGGTGGCGGCGGTGGACAAC	CCGGGTCCGC

Motif GTTSTCCCCAG

Start	P-value		Site
404	3.35e-07	GAATACCCAG	GTTCTCCCCAG	CCCAACCCAC
383	7.09e-07	TCTCCCCATC	GTTGTCCCCAG	GAATACCCAG
371	1.03e-06	GGAGAGGGCA	GTTCTCCCCAT	CGTTGTCCCC
680	2.96e-06	GGACAACTTC	GTCCTCCCCAG	CCTGTGGATG
163	4.48e-06	CCGCGGCTCG	GTTGTGCACAG	GCCCCACTTC

Motif TGTGGA

Start	P-value		Site
761	2.08e-04	GAACAGCGGG	TGTGGA	CGTGTCGGGG
719	2.08e-04	GCGGCGAACC	TGTGGA	GCAGTGTGCC
693	2.08e-04	CTCCCCAGCC	TGTGGA	TGGCGGATCG
656	2.08e-04	CCATCCCCCT	TGTGGA	GGGGGTCGGG
324	2.08e-04	CCGGGTCCGC	TGTGGA	CAGCCGGAAG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI95010935	100.0	916	0	0	1	916	1	916	0.0	1692
ORI96010199	78.67	361	58	17	163	515	931	582	0.0	222