Basic Information

Assembly acc GCF_041890355.1
Acc NZ_CP169059.1
OriID ORI97275272
Organism Mycobacterium hainanense
Topology Circular
Lineage Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium hainanense
Assembly Level Complete
Literature linkage Not linked
Chromosome size 5800079 nt
Chromosome GC content 67.88%
Indicator genes
  • dnaA      1... 1533nt
  • dnaN      2070... 3269nt
  • hemE      3775327... 3776376nt
  • hemB      5051365... 5052351nt
  • rpmH      5799333... 5799476nt
OriC location
  • 1533 ... 2069 nt
OriC Length
  • 536 nt
OriC AT Content
  • 0.4

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH001782
Cluster members 4
Distinct accessions 4
Species / genera 4 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97259943 NZ_CP079863.1 Mycobacterium sp. SMC-2 83.30% 100.00% Not linked
2 ORI97020598 NZ_AP022582.1 Mycobacterium seoulense 83.50% 93.50% Not linked
3 ORI97034092 NZ_AP022619.1 Mycobacterium paraseoulense 83.50% 93.50% Not linked
4 ORI97226948 NC_017904.1 Mycobacterium sp. MOTT36Y 76.80% 97.00% Not linked
5 ORI97207846 NZ_CP012885.2 Mycobacterium intracellulare subsp. chimaera 76.40% 97.00% Not linked
6 ORI97208872 NZ_CP045963.1 Mycobacterium intracellulare subsp. chimaera 76.40% 97.00% Not linked
7 ORI97227650 NZ_LT703505.1 Mycobacterium intracellulare subsp. chimaera 76.40% 97.00% Not linked
8 ORI97227746 NZ_CP015272.1 Mycobacterium intracellulare subsp. chimaera 76.40% 97.00% Not linked
9 ORI97227747 NZ_CP015278.1 Mycobacterium intracellulare subsp. chimaera 76.40% 97.00% Not linked
10 ORI97227785 NZ_CP019221.1 Mycobacterium intracellulare subsp. chimaera 76.40% 97.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP169059.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
1 1533 MTDDPGSGFTTVWNAVVSEL...

OriC Visualization

OriC map
OriC sequences
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaaCTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnan
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
dnaACTCCAGCCTTCGCTGCGCACCCCTCGCGACATTTTTTCCAAAAAACTTCTCGCACGTCTGTCACACCCGCCACACCAAGGGGTTGTGCGCAGGACTGTGCACAACGCGATCAAACACCCGTGGACTACGCGGCGCCGCGTGCACAACCGCCAGCACTCCCCAAGGGCCCAACACCGGACTCACAGTTGTTCACCCCGTAATCCACAGGCCCATCGCCGCCCTAGCTGCGTCGCAGCGCGGCTGTCCCCAGAATGCACAGCCCTTATTACTAGTACTGAGATCTCTTCGTCGTTTCTTCTTTGAAATACAGCGCTGGGGAGGCTCGGACGAATACCCCGCACGGATCCGCCGGTGGCCGGGCTTGTCGGGGTTCTCGATTAGCTTTCAAGATGGCCCCGGACGATCTACGGTTGTTCTTCGACTGCCGTTGCGGTCGTCGATGGCATGACGTGCCAGTGGCGTTCGTAGCGGAGCCCGTGCTAGCGGACGCGGCTAGCTACTGGACTTTTGAAACTCTCGGTAGGTGAAGGGACGCTdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI60040082 75.48% 518 105 18 31 536 62 569 0.0 233.0
ORI10040011 74.81% 532 111 19 18 536 48 569 0.0 219.0
Found 2 BLAST matches
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