Basic Information

Assembly acc GCF_000418535.1
Acc NC_021715.1
OriID ORI97245258
Organism Mycobacterium intracellulare subsp. yongonense 05-1390
Topology Circular
Lineage Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium intracellulare
Assembly Level Complete
Literature linkage Not linked
Chromosome size 5521023 nt
Chromosome GC content 67.95%
Indicator genes
  • dnaA      33... 1535nt
  • dnaN      2071... 3270nt
  • hemE      3697174... 3698247nt
  • hemB      4804271... 4805260nt
  • rpmH      5520279... 5520422nt
OriC location
  • 1535 ... 2070 nt
OriC Length
  • 535 nt
OriC AT Content
  • 0.38

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000082
Cluster members 132
Distinct accessions 132
Species / genera 7 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97227757 NZ_CP015964.1 Mycobacterium intracellulare subsp. yongonense 100.00% 100.00% Not linked
2 ORI97247531 NZ_CP015965.1 Mycobacterium intracellulare subsp. yongonense 100.00% 99.40% Not linked
3 ORI97207486 NZ_AP024245.1 Mycobacterium intracellulare 98.60% 100.00% Not linked
4 ORI97207508 NZ_AP024260.1 Mycobacterium intracellulare 98.60% 100.00% Not linked
5 ORI97207512 NZ_AP024264.1 Mycobacterium intracellulare 98.60% 100.00% Not linked
6 ORI97227745 NZ_CP015267.1 Mycobacterium intracellulare subsp. chimaera 98.60% 100.00% Not linked
7 ORI97227807 NZ_CP022223.1 Mycobacterium intracellulare subsp. chimaera 98.60% 100.00% Not linked
8 ORI97227813 NZ_CP023151.1 Mycobacterium intracellulare subsp. chimaera 98.60% 100.00% Not linked
9 ORI97207846 NZ_CP012885.2 Mycobacterium intracellulare subsp. chimaera 98.50% 100.00% Not linked
10 ORI97208872 NZ_CP045963.1 Mycobacterium intracellulare subsp. chimaera 98.50% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_021715.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
1 5521023 MTDDPGSGFTTVWNAVVSEL...

OriC Visualization

OriC map
OriC sequences
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaaATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnan
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCGGGTTTTCGGCGCCCCTGCGCGCAATTTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCTAGGGCATGTGCGCAGCCCTGTGCACACAGCCTTCAAACTCCGGTGCAGTACCGGGCGTTCCGTGCACACCCGTCGTTCGTCCCCACGGGACCAACACCTGACTCACAGGCGACGCCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGCAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGGCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGGGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI60040082 82.92% 527 72 15 19 535 51 569 0.0 459.0
ORI10040011 82.69% 520 72 15 26 535 58 569 0.0 446.0
Found 2 BLAST matches
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