Basic Information

Assembly acc GCF_000008565.1
Acc NC_001263.1
OriID ORI10010007
Organism Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Topology Circular
Lineage Bacteria ; Thermotogati ; Deinococcota ; Deinococci ; Deinococcales ; Deinococcaceae ; Deinococcus ; Deinococcus radiodurans
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2648638 nt
Chromosome GC content 67.01%
Indicator genes
  • dnaA      1904... 3268nt
  • gidA      26166... 27968nt
  • rpmH      2152999... 2153142nt
  • hemB      2158411... 2159415nt
OriC location
  • 1183 ... 1903 nt
OriC Length
  • 721 nt
OriC AT Content
  • 0.516

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000450
Cluster members 18
Distinct accessions 17
Species / genera 3 / 1
Literature-linked members 1

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97243927 NC_001263.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 100.00% 99.60% Not linked
2 ORI97012533 NZ_CP015081.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 99.80% 99.60% Not linked
3 ORI97020012 NZ_CP038979.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 99.80% 99.60% Not linked
4 ORI97020729 NZ_CP031500.1 Deinococcus radiodurans 99.80% 99.60% Not linked
5 ORI97021066 NZ_CP038983.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 99.80% 99.60% Not linked
6 ORI97023361 NZ_CP038975.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 99.80% 99.60% Not linked
7 ORI97024494 NZ_CP038987.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 99.80% 99.60% Not linked
8 ORI97025059 NZ_CP038663.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 99.80% 99.60% Linked
9 ORI97028165 NZ_CP038991.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 99.80% 99.60% Not linked
10 ORI97030101 NZ_CP050116.1 Deinococcus radiodurans 99.80% 99.60% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_001263.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
1904 3304 MSQEIWADVLAYVRKNVSDL...

OriC Visualization

OriC map
OriC sequences
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
hemBCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGATGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI10010007 100.00% 721 0 0 1 721 1 721 0.0 1332.0
ORI94010831 95.12% 41 2 0 327 367 222 182 0.0 65.8
Found 2 BLAST matches
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