Basic Information
| Assembly acc |
GCF_011604805.1
|
| Acc |
NZ_CP050116.1
|
| OriID | ORI97030101 |
| Organism | Deinococcus radiodurans |
| Topology | Circular |
| Lineage | Bacteria ; Thermotogati ; Deinococcota ; Deinococci ; Deinococcales ; Deinococcaceae ; Deinococcus ; Deinococcus radiodurans |
| Assembly Level | Complete |
| Literature linkage | Not linked |
| Chromosome size | 2648775 nt |
| Chromosome GC content | 67.06% |
| Indicator genes |
|
| OriC location |
|
| OriC Length |
|
| OriC AT Content |
|
Comparative Sequence Support
Recurrence category
Cross-taxon
Sequence cluster
BC-OH000450
Cluster members
18
Distinct accessions
17
Species / genera
3 / 1
Literature-linked members
1
Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.
Top 10 most similar Ori IDs
| Rank | Ori ID | Accession | Organism | Identity | Reciprocal coverage | Literature linkage |
|---|---|---|---|---|---|---|
| 1 | ORI97012533 |
NZ_CP015081.1 |
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | 100.00% | 100.00% | Not linked |
| 2 | ORI97020012 |
NZ_CP038979.1 |
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | 100.00% | 100.00% | Not linked |
| 3 | ORI97020729 |
NZ_CP031500.1 |
Deinococcus radiodurans | 100.00% | 100.00% | Not linked |
| 4 | ORI97021066 |
NZ_CP038983.1 |
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | 100.00% | 100.00% | Not linked |
| 5 | ORI97023361 |
NZ_CP038975.1 |
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | 100.00% | 100.00% | Not linked |
| 6 | ORI97024494 |
NZ_CP038987.1 |
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | 100.00% | 100.00% | Not linked |
| 7 | ORI97025059 |
NZ_CP038663.1 |
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | 100.00% | 100.00% | Linked |
| 8 | ORI97028165 |
NZ_CP038991.1 |
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | 100.00% | 100.00% | Not linked |
| 9 | ORI97031644 |
NZ_CP068791.1 |
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | 100.00% | 100.00% | Not linked |
| 10 | ORI97032131 |
NZ_CP050120.1 |
Deinococcus radiodurans | 100.00% | 100.00% | Not linked |
The interactive Z-curves rotated at the maximum of the GC disparity.
RIP Sequence-Similarity Network
Replication Initiation Protein Information
| Gene Start | Gene End | Translation |
|---|---|---|
| 560317 | 561717 | MSQEIWADVLAYVRKNVSDL... |
OriC Visualization
| OriC map | |
| OriC sequences |
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnanCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaa
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
5'-DnaA box-3'
3'-DnaA box-5'
Spacer
DnaA-trio
ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site |
BLAST Results
| Subject ID | Identity (%) | Length | Mismatches | Gaps | Query Start | Query End | Subject Start | Subject End | E-value | Bit Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ORI10010007 | 99.86% | 721 | 0 | 1 | 4 | 723 | 1 | 721 | 0.0 | 1325.0 |
| ORI94010831 | 73.36% | 229 | 43 | 15 | 330 | 547 | 222 | 1 | 0.0 | 69.4 |
Found 2 BLAST matches