Basic Information

Assembly acc GCF_020546785.1
Acc NZ_CP038979.1
OriID ORI97020012
Organism Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Topology Circular
Lineage Bacteria ; Thermotogati ; Deinococcota ; Deinococci ; Deinococcales ; Deinococcaceae ; Deinococcus ; Deinococcus radiodurans
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2645322 nt
Chromosome GC content 67.08%
Indicator genes
  • dnaN      93... 1178nt
  • dnaA      1902... 3302nt
  • gidA      26164... 27966nt
  • hemE      1145123... 1146301nt
  • rpmH      2150501... 2150644nt
  • hemB      2155927... 2156919nt
OriC location
  • 1179 ... 1901 nt
OriC Length
  • 723 nt
OriC AT Content
  • 0.5145

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000450
Cluster members 18
Distinct accessions 17
Species / genera 3 / 1
Literature-linked members 1

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97012533 NZ_CP015081.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 100.00% 100.00% Not linked
2 ORI97020729 NZ_CP031500.1 Deinococcus radiodurans 100.00% 100.00% Not linked
3 ORI97021066 NZ_CP038983.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 100.00% 100.00% Not linked
4 ORI97023361 NZ_CP038975.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 100.00% 100.00% Not linked
5 ORI97024494 NZ_CP038987.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 100.00% 100.00% Not linked
6 ORI97025059 NZ_CP038663.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 100.00% 100.00% Linked
7 ORI97028165 NZ_CP038991.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 100.00% 100.00% Not linked
8 ORI97030101 NZ_CP050116.1 Deinococcus radiodurans 100.00% 100.00% Not linked
9 ORI97031644 NZ_CP068791.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 100.00% 100.00% Not linked
10 ORI97032131 NZ_CP050120.1 Deinococcus radiodurans 100.00% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP038979.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
1902 3302 MSQEIWADVLAYVRKNVSDL...

OriC Visualization

OriC map
OriC sequences
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnanCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaa
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
dnaNCACCGGCCATTCTACGCCGTTTGCCCGGCAGATTTCAGGGGAGAAAACCGCGTTTAGGACGGCCTTTTTGGCAATGGCATTTGCAGTAGAGGGTTTTTGCAGCCAACTCCCGACTTATCCACAGAACTTATCCACAACCTGGGGAAAACTTCGTGCTGGACATGAAATTGTTCTGAGCTTCGGGTCTGGAATCTGAAGAACGATCAGTCCTGAGACGCCTCACGTTGGATCTCAACTCGGAACCTCCTTTTGGAATTTTCCAGAGTCCTTTGTGGAAGGCCCAAGGTCACCTGGCCTATCTGTTAACTGTTCTTCTTAAAAAATAAAAACAGTAGTAGCAGTAGTAGGGCCTGTGGATACTGTGGAAAACTCACCTTGAAGCCGTCCCAGAGGACAAAAGTTTTCCACAGAGGGGGTGTGGATAACCCCGAAAACCTGTGGATAAGCTGTGGATAACTTGGGGGGTTATCCACAGGGCATTTTTAGGGGCAAGTTATCCACAATTTTATCCACAGGATTTTGGCACTTATCCACAGGATATCCACAGGTTTTTCCACAGAAAGTGAAAAGTTTCACCGCCATTTGGAACGGGATTTTGGAACGTTTCAGCCTATGACCTAACTTTTGGGGGCATAATCTGCATACTTCCGGCATCTCATTCTCTTCCCAGCATACCAAACTGGCCCAAAAAAGGGGCCCTTCGCCCCTCTTGGCCCGGCAACCdnaA
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI10010007 99.86% 721 0 1 4 723 1 721 0.0 1325.0
ORI94010831 73.36% 229 43 15 330 547 222 1 0.0 69.4
Found 2 BLAST matches
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