DoriC

RefSeq

NZ_CP021830

DoriC accession number

pORI00000976

OriC length

2032 nt

OriC AT content

0.4134

The location of oriC region

1081013..1083044 nt

Browse in NCBI

OriC map

OriC sequences

CTCGTGTCAGCAACAATGGAGTCTATGCCTCGACACCAGCAAGTCAAGGTGGAGTGATATCGTCAAAGAAAGCCGCCGCAGCGAGCGGAGGCGGGCATCCAGAGAGAGGACGCGCCTGCGTTGCGCGTCAGTTGCCGAATAATGTTCCCCGCGGGGAATTCGGAGAGTGTTCCCCGCGGGGAACATTGGAACCGTGGGACCAGTTCCGGTCCTAGCCGAGTGGTGGGTTGCCGCGGTCAGGAGTGGCGGAAGTTATCAGCAAGATAGCTTCCATAAGGCCGTAAAATGTGTTTTTCTTCAATTACTTATAGAAGCCTCAGAAAACACTCGTCATGCCCGTCCGACCAGCATCACAAACCTTACCTTAAGTCGGCCGGCTCCCGCAAACTGTAATTTCTCGGCCACTAATGCCACGGCTTTTGGAGCTGTCAGCGTGACCATTGCGCATCGCCGCAGTCGGATCTGCCGCTGTCTCGCTGTTTAGCTCGAAAGCCGAAAGCCGAAAGCCGAAGGCATATGTCTGGCCCTGCTCTAGCTCGCCGATCTACTTGAGAGAGGAGCTACGATTGGAATGATCAAAGTAGGTTCACCCCGCCGGTTCGCCGCTACGGATACGCTCCCCCAGCCGTGCGCCCTGACCACCCATGACGGCCTGACCACCCATGACGCCCTGCCCTCCTCCGTCAGCGGCCCGAGCGACCAGCGTCCTTCGCAAAGGCATGGGGTTCTTCGGGGGTCGATTAGAGGCAATCCTTCACGGGAAGGCTTCTACAGCAAAAGCCGGCTGCCGGGCCAATCGGCGCCGAGCGTGACTCTCGTCTTGCGGCGTTGTCGAGATCTCCTCCAAAAGTTCCCCGCGGGGAACAGTTGAAGCTTGGCATTCGGCCGCACCTGAAGCGCCGGGAAAATCAGACCCGCGGCAAAGTCGATCACCGTCTATTGGATCACCACCCCGCCGCGAGTAGTGTTCCCCGCGGGGTACACAGTCGGTGCACGACGTTTTGCGCGACGGCGAATGAAGCCTCGGCAAGGCCGCGAGAGAACGCCAAGTAAACCGTCGAGTTCCACCGCGCAATCGAGCAGGGCGGTAGTGCCGCGGCGACCGGCTTAAAACAAGTGCTATCGCAAGAGATCGTTCAGCCGCTCGACACGATAGTCCGTCCGAAAGATACCGACACTCGTGCAGCCAGCGTGTCCTTCAATGCGGACGCACTTTCCCGCTTCAACAGGAAGTTTGCCTTGCACCGAAGCAACCGGGCCTGACATGTCGTCCTGCGGCATCTCACACCCCCCGTAGATGGTCGCATCAACGGAGCTAGGGTTGGCACGCCCCCAAGTTCCCCGCGGGGAACGCTTGGCTTCACTCTTGTCTGAGGCAACCGTCTGGATCGAAATCATATTACGGGAACAGGTCCTGCCGATTGTCAAATCTACGCAACCTTCACCGCTACTCTAGTCTCGAGGTGTGGCCGATGCATTGTGTATCTCCGGCAACCTGTTCGCGCCAGAACGCCGCCAGCTTTCCGGCGGAGAATCATCCGGTGCAGTCGTTGCTCGGTCATGGCCCACGAGATTGGGGTAGCCCGGAGCGCAGGCGAGCACCGAGATGCCGAGCTGTTCCCAATACGGCACATATGTCTCGCCTTGGCGAGCAGTCGGTACTGCGCGCCAGCGTCGTCGCTTCGAGAGTTCCCCGCGGGGAACTCTGCGAAGAGTTCGGCAGATCTCCATTGAAAGCAACGGCCAACCATTTCCGCAGTGAACCACTATTGCGTCTCCGCCCAGCGACGTCTGCGCACATCTTCGTCCAAAAAAGAGGCGGGGAGGGTCGAGAAACCGGCATGCACTGGCGCCTTCCCCCCGGCTCCGTGCGTCATCCACAGCGCGCATTGATGGCCATAGCCGAATCGGAGTACGTCTTAGTTGCGGAAATTTTTCGAATTTGCGTGTTTTCGAGTAGTTACGTGGCGATTAGCAAGCGGTTAACCACTTCACTGCTTAAGTGACGGAAACGATCACAGGGATTCTTTCG

AT-rich region

The information of repeat sequences

Motif ARWGTTCCCCGCGGGGAACW

Start	P-value		Site
166	1.90e-12	GAATTCGGAG	AGTGTTCCCCGCGGGGAACA	TTGGAACCGT
847	9.98e-12	ATCTCCTCCA	AAAGTTCCCCGCGGGGAACA	GTTGAAGCTT
1686	1.19e-11	CGTCGCTTCG	AGAGTTCCCCGCGGGGAACT	CTGCGAAGAG
964	1.73e-11	CGCCGCGAGT	AGTGTTCCCCGCGGGGTACA	CAGTCGGTGC
141	2.30e-11	GTTGCCGAAT	AATGTTCCCCGCGGGGAATT	CGGAGAGTGT

Motif WATBTCTCGNCTTKBSGHGYTGTCG

Start	P-value		Site
1634	2.83e-12	ATACGGCACA	TATGTCTCGCCTTGGCGAGCAGTCG	GTACTGCGCG
1931	1.08e-11	TAGTTGCGGA	AATTTTTCGAATTTGCGTGTTTTCG	AGTAGTTACG
407	5.47e-11	CTCGGCCACT	AATGCCACGGCTTTTGGAGCTGTCA	GCGTGACCAT
810	1.04e-10	GCGCCGAGCG	TGACTCTCGTCTTGCGGCGTTGTCG	AGATCTCCTC

Motif GCGSARGCGAKCABCGAGAT

Start	P-value		Site
1589	8.50e-11	GTAGCCCGGA	GCGCAGGCGAGCACCGAGAT	GCCGAGCTGT
246	2.04e-09	GTCAGGAGTG	GCGGAAGTTATCAGCAAGAT	AGCTTCCATA
2006	8.51e-09	TGCTTAAGTG	ACGGAAACGATCACAGGGAT	TCTTTCG
1070	2.49e-08	GAGTTCCACC	GCGCAATCGAGCAGGGCGGT	AGTGCCGCGG
85	2.98e-08	GCCGCAGCGA	GCGGAGGCGGGCATCCAGAG	AGAGGACGCG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000976	100.0	2032	0	0	1	2032	1	2032	3753
pORI00000975	96.968	2045	47	7	1	2032	1	2043	3419
pORI00000574	96.968	2045	47	7	1	2032	2043	1	3419
pORI00000364	96.919	2045	48	7	1	2032	2043	1	3413