DoriC

RefSeq

NZ_CP021798

DoriC accession number

pORI00000975

OriC length

2043 nt

OriC AT content

0.417

The location of oriC region

724570..726612 nt

Browse in NCBI

OriC map

OriC sequences

CTCGTGTCAGCAACAATGGAGTCTAGGCCTCGACACCAGCAAGTCAAGGTGGAGTGATATCGTCAAAGAAAGCCGCCGCAGCGAGCGGAGGCGGGCATCCAGAGAGAGGACGCGCCTGTGTTGCGCGTCAGTTGCCGAATAATGTTCCCCGCGGGGAATTCGGAGAGTGTTCCCCGCGGGGAACATTGGAACCGTGGGACCAGTTCCGGTACTAGCCGAGCGGTGGGTTGCCGCGGTCAGGAGTGGCGGAAGTTATCAGCACGATAGCTTCCATAAGGCCGTAAAATGTGTTTTTCTTCAATTACTTATAGAAGCCTCAGAAAACACTCGTCATGCCCGTCCGACCAGCATCACAAACCTTACCTTAAGTCGGCCGGCTCCCGCAAACTGTAATTTCTCGGCCACTAATGCCACGGCTTGTGGAGCTGTCAGCGTGACCATTGCGCATCGCCGCAGTCGGATCTGCCGCTGTCTCGCTGTTTAGCTCGAAAGCCGAAAGCCGAAAGCCGAAAGCCGAAGGCATATGTTTGGCCCTGCTCTAGCTCGCCGATCTACTTGAGAGAGGAGCTACGATTGAAATGATCAAAGTAGGTTCACCCCGCCGGTTCGCCGCTACGGATACGCTCACCCAGCCGTGCGCCCTGACCACCCATGACGGCCTGACCACCCATGACGCCCTGCCCTCCTCCGTCAGCGGTCCGAGCGACCAGCGTCCTTCGCAAAGGCATGGGGTTCTTCGGGGGTCGATTAGAGGCAATCCTTCACGGGAAGGCTTCTACAGCAAAAGCCGGCTGCCGGGCCAATCGGCGCCGAGCGTGACTCTCGTCTTGCGGCGTTGTCGAGATCTCCTCCAAAAGTTCCCCGCGGGGAACAGTTGAAGCTTGGCATTCGGCCGCACCTGAAGCGCCGGGAAAGTCAGACCCGCGGCAAAGTCGATCACCGTCTATTGGATCACCACCCCGCCGCGAGTAGTGTTCCCCGCGGGGTACACAGTCGGTGCACGACGTTTTGCGCGACGGCGAATGAAGCCTCGGCAAGACTGTGAGAGAACGCCAAGTGAACCGTCGAGTTCCACCGCGGCGGTCGAGCAGGGCGGTAGTGTCGCGGCGACCGGCTTAAAAGAAGTTCCTATCGCAAGAGATTGTCAGCCGCTCGACACGATAGTCCGTCCAAAGGATACCGACACTCGTGCAACCAGCGTGTCCTTTAATGCGGTCGCACTTTCCCGCCTCAACAGGAAGTTTGCCTTGCACCGAAGCAACCGGGCCTGACATTTCGTCCTATAGCGGCATCTCACACCTGCCGTAGATGGTCGCATCAACGGAGCTACGGTCGGCACGCCGCCAAGTTCCCCGCGGGGAACGCTTGGCTTCACTCTTGTCTGAGGCAATCGTCTGGACCGAAAATCATATTACGGGAACAGGTCCTGCCGATTGCCAAATATACGCAACCTTCACCGCTACTCTAGTCTCGAGGCGTGGCCTATGCATTGTGTATCTCCGGCAACCTGTTCACGCCCGAACGCCGCCAGCTTTCCGGCGGAGAACCATCCGGTGCAGTCGTTGCTCGGTCATGGCCAACGAGATTGAGGCAGGCCGGAGCGCAGGCGAGCACCGAGATGCCGAGCTGTTCCCAATACGGCACATATGTCTCGCCTTGGCGAGCAGTCGGTACTGCGCGCCAGCGTCGTCGCTTCGAGAGTTCCCCGCGGGGAACTCTGCGAAGAGTTCGGCAGATCTCCATTGAAAGCAACGGCCAACCATTTCCGCAGTGAACCACTATTGCGTCTCCGCCCAGCGACGTCTGCGCACATCTTCGTCCAAAAAAGAGGCGGGGAGGGTCGAGAACCGGCATGCACTGGCGCCTTCCCCCCGGCTCTGTGCGTCATCCACAGCGCGCATTGATGGCCATAGCCGAATCGGAGTACGTCTTAGTTGCGGAAATTTTTCGAATTTGCGTGTTTTCGAGTAGTTACGTGGCGATTAGCAAGCGGTTAACCACTTCACTGCTTAAGTGACGGAAACGATCACAGGGATTCTTTCG

AT-rich region

The information of repeat sequences

Motif ARWGTTCCCCGCGGGGAACW

Start	P-value		Site
166	1.84e-12	GAATTCGGAG	AGTGTTCCCCGCGGGGAACA	TTGGAACCGT
854	9.70e-12	ATCTCCTCCA	AAAGTTCCCCGCGGGGAACA	GTTGAAGCTT
1698	1.15e-11	CGTCGCTTCG	AGAGTTCCCCGCGGGGAACT	CTGCGAAGAG
971	1.68e-11	CGCCGCGAGT	AGTGTTCCCCGCGGGGTACA	CAGTCGGTGC
141	2.15e-11	GTTGCCGAAT	AATGTTCCCCGCGGGGAATT	CGGAGAGTGT

Motif WATBTCTCGNCTTGBSGHGYTGTCG

Start	P-value		Site
1646	1.17e-12	ATACGGCACA	TATGTCTCGCCTTGGCGAGCAGTCG	GTACTGCGCG
1942	3.18e-11	TAGTTGCGGA	AATTTTTCGAATTTGCGTGTTTTCG	AGTAGTTACG
407	5.44e-11	CTCGGCCACT	AATGCCACGGCTTGTGGAGCTGTCA	GCGTGACCAT
817	7.28e-11	GCGCCGAGCG	TGACTCTCGTCTTGCGGCGTTGTCG	AGATCTCCTC

Motif GABKGAAAYSDTCAMAGDAAG

Start	P-value		Site
572	6.41e-11	GAGGAGCTAC	GATTGAAATGATCAAAGTAGG	TTCACCCCGC
52	1.32e-10	AGTCAAGGTG	GAGTGATATCGTCAAAGAAAG	CCGCCGCAGC
2016	9.52e-10	CTGCTTAAGT	GACGGAAACGATCACAGGGAT	TCTTTCG
751	2.76e-09	GGGTCGATTA	GAGGCAATCCTTCACGGGAAG	GCTTCTACAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000975	100.0	2043	0	0	1	2043	1	2043	3773
pORI00000574	100.0	2043	0	0	1	2043	2043	1	3773
pORI00000364	99.951	2043	1	0	1	2043	2043	1	3768
pORI00000976	96.968	2045	47	7	1	2043	1	2032	3419