DoriC

RefSeq

NC_020527

DoriC accession number

pORI00000574

OriC length

2058 nt

OriC AT content

0.4169

The location of oriC region

1351871..1367 nt

Browse in NCBI

OriC map

OriC sequences

CGAAAGAATCCCTGTGATCGTTTCCGTCACTTAAGCAGTGAAGTGGTTAACCGCTTGCTAATCGCCACGTAACTACTCGAAAACACGCAAATTCGAAAAATTTCCGCAACTAAGACGTACTCCGATTCGGCTATGGCCATCAATGCGCGCTGTGGATGACGCACAGAGCCGGGGGGAAGGCGCCAGTGCATGCCGGTTCTCGACCCTCCCCGCCTCTTTTTTGGACGAAGATGTGCGCAGACGTCGCTGGGCGGAGACGCAATAGTGGTTCACTGCGGAAATGGTTGGCCGTTGCTTTCAATGGAGATCTGCCGAACTCTTCGCAGAGTTCCCCGCGGGGAACTCTCGAAGCGACGACGCTGGCGCGCAGTACCGACTGCTCGCCAAGGCGAGACATATGTGCCGTATTGGGAACAGCTCGGCATCTCGGTGCTCGCCTGCGCTCCGGCCTGCCTCAATCTCGTTGGCCATGACCGAGCAACGACTGCACCGGATGGTTCTCCGCCGGAAAGCTGGCGGCGTTCGGGCGTGAACAGGTTGCCGGAGATACACAATGCATAGGCCACGCCTCGAGACTAGAGTAGCGGTGAAGGTTGCGTATATTTGGCAATCGGCAGGACCTGTTCCCGTAATATGATTTTCGGTCCAGACGATTGCCTCAGACAAGAGTGAAGCCAAGCGTTCCCCGCGGGGAACTTGGCGGCGTGCCGACCGTAGCTCCGTTGATGCGACCATCTACGGCAGGTGTGAGATGCCGCTATAGGACGAAATGTCAGGCCCGGTTGCTTCGGTGCAAGGCAAACTTCCTGTTGAGGCGGGAAAGTGCGACCGCATTAAAGGACACGCTGGTTGCACGAGTGTCGGTATCCTTTGGACGGACTATCGTGTCGAGCGGCTGACAATCTCTTGCGATAGGAACTTCTTTTAAGCCGGTCGCCGCGACACTACCGCCCTGCTCGACCGCCGCGGTGGAACTCGACGGTTCACTTGGCGTTCTCTCACAGTCTTGCCGAGGCTTCATTCGCCGTCGCGCAAAACGTCGTGCACCGACTGTGTACCCCGCGGGGAACACTACTCGCGGCGGGGTGGTGATCCAATAGACGGTGATCGACTTTGCCGCGGGTCTGACTTTCCCGGCGCTTCAGGTGCGGCCGAATGCCAAGCTTCAACTGTTCCCCGCGGGGAACTTTTGGAGGAGATCTCGACAACGCCGCAAGACGAGAGTCACGCTCGGCGCCGATTGGCCCGGCAGCCGGCTTTTGCTGTAGAAGCCTTCCCGTGAAGGATTGCCTCTAATCGACCCCCGAAGAACCCCATGCCTTTGCGAAGGACGCTGGTCGCTCGGACCGCTGACGGAGGAGGGCAGGGCGTCATGGGTGGTCAGGCCGTCATGGGTGGTCAGGGCGCACGGCTGGGTGAGCGTATCCGTAGCGGCGAACCGGCGGGGTGAACCTACTTTGATCATTTCAATCGTAGCTCCTCTCTCAAGTAGATCGGCGAGCTAGAGCAGGGCCAAACATATGCCTTCGGCTTTCGGCTTTCGGCTTTCGGCTTTCGAGCTAAACAGCGAGACAGCGGCAGATCCGACTGCGGCGATGCGCAATGGTCACGCTGACAGCTCCACAAGCCGTGGCATTAGTGGCCGAGAAATTACAGTTTGCGGGAGCCGGCCGACTTAAGGTAAGGTTTGTGATGCTGGTCGGACGGGCATGACGAGTGTTTTCTGAGGCTTCTATAAGTAATTGAAGAAAAACACATTTTACGGCCTTATGGAAGCTATCGTGCTGATAACTTCCGCCACTCCTGACCGCGGCAACCCACCGCTCGGCTAGTACCGGAACTGGTCCCACGGTTCCAATGTTCCCCGCGGGGAACACTCTCCGAATTCCCCGCGGGGAACATTATTCGGCAACTGACGCGCAACACAGGCGCGTCCTCTCTCTGGATGCCCGCCTCCGCTCGCTGCGGCGGCTTTCTTTGACGATATCACTCCACCTTGACTTGCTGGTGTCGAGGCCTAGACTCCATTGTTGCTGACACGAGATGGAGGCTGTTCCC

AT-rich region

The information of repeat sequences

Motif WGTTCCCCGCGGGGAACWYT

Start	P-value		Site
1859	1.88e-12	ACGGTTCCAA	TGTTCCCCGCGGGGAACACT	CTCCGAATTC
1171	9.96e-12	AAGCTTCAAC	TGTTCCCCGCGGGGAACTTT	TGGAGGAGAT
327	1.18e-11	CTCTTCGCAG	AGTTCCCCGCGGGGAACTCT	CGAAGCGACG
1054	1.73e-11	GCACCGACTG	TGTACCCCGCGGGGAACACT	ACTCGCGGCG
1884	2.20e-11	ACACTCTCCG	AATTCCCCGCGGGGAACATT	ATTCGGCAAC

Motif CGACARCDCSVCAAGNCGAGAVATW

Start	P-value		Site
374	1.15e-12	CGCGCAGTAC	CGACTGCTCGCCAAGGCGAGACATA	TGTGCCGTAT
78	3.15e-11	CGTAACTACT	CGAAAACACGCAAATTCGAAAAATT	TCCGCAACTA
1613	5.39e-11	ATGGTCACGC	TGACAGCTCCACAAGCCGTGGCATT	AGTGGCCGAG
1203	7.22e-11	GAGGAGATCT	CGACAACGCCGCAAGACGAGAGTCA	CGCTCGGCGC

Motif CTTHCTKTGAHSRTTTCMVTC

Start	P-value		Site
1452	6.63e-11	GCGGGGTGAA	CCTACTTTGATCATTTCAATC	GTAGCTCCTC
1972	1.36e-10	GCTGCGGCGG	CTTTCTTTGACGATATCACTC	CACCTTGACT
8	9.81e-10	CGAAAGA	ATCCCTGTGATCGTTTCCGTC	ACTTAAGCAG
1273	2.83e-09	CTGTAGAAGC	CTTCCCGTGAAGGATTGCCTC	TAATCGACCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000574	100.0	2058	0	0	1	2058	1	2058	3801
pORI00000975	100.0	2043	0	0	1	2043	2043	1	3773
pORI00000364	99.951	2043	1	0	1	2043	1	2043	3768
pORI00000976	96.968	2045	47	7	1	2043	2032	1	3419