DoriC

RefSeq

NC_003037

DoriC accession number

pORI00000364

OriC length

2043 nt

OriC AT content

0.417

The location of oriC region

1353536..1352 nt

Browse in NCBI

OriC map

OriC sequences

CGAAAGAATCCCTGTGATCGTTTCCGTCACTTAAGCAGTGAAGTGGTTAACCGCTTGCTAATCGCCACGTAACTACTCGAAAACACGCAAATTCGAAAAATTTCCGCAACTAAGACGTACTCCGATTCGGCTATGGCCATCAATGCGCGCTGTGGATGACGCACAGAGCCGGGGGGAAGGCGCCAGTGCATGCCGGTTCTCGACCCTCCCCGCCTCTTTTTTGGACGAAGATGTGCGCAGACGTCGCTGGGCGGAGACGCAATAGTGGTTCACTGCGGAAATGGTTGGCCGTTGCTTTCAATGGAGATCTGCCGAACTCTTCGCAGAGTTCCCCGCGGGGAACTCTCGAAGCGACGACGCTGGCGCGCAGTACCGACTGCTCGCCAAGGCGAGACATATGTGCCGTATTGGGAACAGCTCGGCATCTCGGTGCTCGCCTGCGCTCCGGCCTGCCTCAATCTCGTTGGCCATGACCGAGCAACGACTGCACCGGATGGTTCTCCGCCGGAAAGCTGGCGGCGTTCGGGCGTGAACAGGTTGCCGGAGATACACAATGCATAGGCCACGCCTCGAGACTAGAGTAGCGGTGAAGGTTGCGTATATTTGGCAATCGGCAGGACCTGTTCCCGTAATATGATTTTCGGTCCAGACGATTGCCTCAGACAAGAGTGAAGCCAAGCGTTCCCCGCGGGGAACTTGGCGGCGTGCCGACCGTAGCTCCGTTGATGCGACCATCTACGGCAGGTGTGAGATGCCGGTATAGGACGAAATGTCAGGCCCGGTTGCTTCGGTGCAAGGCAAACTTCCTGTTGAGGCGGGAAAGTGCGACCGCATTAAAGGACACGCTGGTTGCACGAGTGTCGGTATCCTTTGGACGGACTATCGTGTCGAGCGGCTGACAATCTCTTGCGATAGGAACTTCTTTTAAGCCGGTCGCCGCGACACTACCGCCCTGCTCGACCGCCGCGGTGGAACTCGACGGTTCACTTGGCGTTCTCTCACAGTCTTGCCGAGGCTTCATTCGCCGTCGCGCAAAACGTCGTGCACCGACTGTGTACCCCGCGGGGAACACTACTCGCGGCGGGGTGGTGATCCAATAGACGGTGATCGACTTTGCCGCGGGTCTGACTTTCCCGGCGCTTCAGGTGCGGCCGAATGCCAAGCTTCAACTGTTCCCCGCGGGGAACTTTTGGAGGAGATCTCGACAACGCCGCAAGACGAGAGTCACGCTCGGCGCCGATTGGCCCGGCAGCCGGCTTTTGCTGTAGAAGCCTTCCCGTGAAGGATTGCCTCTAATCGACCCCCGAAGAACCCCATGCCTTTGCGAAGGACGCTGGTCGCTCGGACCGCTGACGGAGGAGGGCAGGGCGTCATGGGTGGTCAGGCCGTCATGGGTGGTCAGGGCGCACGGCTGGGTGAGCGTATCCGTAGCGGCGAACCGGCGGGGTGAACCTACTTTGATCATTTCAATCGTAGCTCCTCTCTCAAGTAGATCGGCGAGCTAGAGCAGGGCCAAACATATGCCTTCGGCTTTCGGCTTTCGGCTTTCGGCTTTCGAGCTAAACAGCGAGACAGCGGCAGATCCGACTGCGGCGATGCGCAATGGTCACGCTGACAGCTCCACAAGCCGTGGCATTAGTGGCCGAGAAATTACAGTTTGCGGGAGCCGGCCGACTTAAGGTAAGGTTTGTGATGCTGGTCGGACGGGCATGACGAGTGTTTTCTGAGGCTTCTATAAGTAATTGAAGAAAAACACATTTTACGGCCTTATGGAAGCTATCGTGCTGATAACTTCCGCCACTCCTGACCGCGGCAACCCACCGCTCGGCTAGTACCGGAACTGGTCCCACGGTTCCAATGTTCCCCGCGGGGAACACTCTCCGAATTCCCCGCGGGGAACATTATTCGGCAACTGACGCGCAACACAGGCGCGTCCTCTCTCTGGATGCCCGCCTCCGCTCGCTGCGGCGGCTTTCTTTGACGATATCACTCCACCTTGACTTGCTGGTGTCGAGGCCTAGACTCCATTGTTGCTGACACGAG

AT-rich region

The information of repeat sequences

Motif WGTTCCCCGCGGGGAACWYT

Start	P-value		Site
1859	1.88e-12	ACGGTTCCAA	TGTTCCCCGCGGGGAACACT	CTCCGAATTC
1171	9.90e-12	AAGCTTCAAC	TGTTCCCCGCGGGGAACTTT	TGGAGGAGAT
327	1.18e-11	CTCTTCGCAG	AGTTCCCCGCGGGGAACTCT	CGAAGCGACG
1054	1.72e-11	GCACCGACTG	TGTACCCCGCGGGGAACACT	ACTCGCGGCG
1884	2.20e-11	ACACTCTCCG	AATTCCCCGCGGGGAACATT	ATTCGGCAAC

Motif CGACARCDCSVCAAGNCGAGAVATW

Start	P-value		Site
374	1.19e-12	CGCGCAGTAC	CGACTGCTCGCCAAGGCGAGACATA	TGTGCCGTAT
78	3.24e-11	CGTAACTACT	CGAAAACACGCAAATTCGAAAAATT	TCCGCAACTA
1613	5.54e-11	ATGGTCACGC	TGACAGCTCCACAAGCCGTGGCATT	AGTGGCCGAG
1203	7.42e-11	GAGGAGATCT	CGACAACGCCGCAAGACGAGAGTCA	CGCTCGGCGC

Motif CTTHCTKTGAHSRTTTCMVTC

Start	P-value		Site
1452	6.46e-11	GCGGGGTGAA	CCTACTTTGATCATTTCAATC	GTAGCTCCTC
1972	1.33e-10	GCTGCGGCGG	CTTTCTTTGACGATATCACTC	CACCTTGACT
8	9.61e-10	CGAAAGA	ATCCCTGTGATCGTTTCCGTC	ACTTAAGCAG
1273	2.79e-09	CTGTAGAAGC	CTTCCCGTGAAGGATTGCCTC	TAATCGACCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000364	100.0	2043	0	0	1	2043	1	2043	3773
pORI00000975	99.951	2043	1	0	1	2043	2043	1	3768
pORI00000574	99.951	2043	1	0	1	2043	1	2043	3768
pORI00000976	96.919	2045	48	7	1	2043	2032	1	3413