DoriC

RefSeq

NC_024966

DoriC accession number

pORI00000237

OriC length

506 nt

OriC AT content

0.6798

The location of oriC region

3922..8 nt

Browse in NCBI

OriC map

OriC sequences

AACATGCATTTATGCCGAGAAAACTTATTGGTTGGAATGGGCTATGTGTTAGCTAACTTGTTAGCGAGTTGGTTGGACTTGAATTGGGATTAATCCCAAGAAAGTACCAACTCAACAACACATAAAGCCCTGTAGGTTCCGACCAATAAGGAAATTGGAATAAAGCAATAAAAGGAGTTGAAGAAATGAAATTCAGAGAAGCCTTTGAGAATTTTATAACAAGTAAGTATGTACTTGGTGTTTTAGTAGTTTTAACTGTTTACCAGATAATACAAATGCTTAAATAAAAAAAGACTTGATCTGATTAGACCAAGTCTTTTGATAGTGTTATATTAATAACAAAATAAAAAGGAGTCGCTCACGCCCTGACCAAAGTTTGTGAACGACATCATTCAAAGAAAAAAACACTGAGTTGTTTTTATGAATTTGTATATTTAAATACTAAACGATATTTAAATATACATCAAGATAAATATTCGGGTGGGCGACTTCTTAAACGATTTTTT

AT-rich region

The information of repeat sequences

Motif GCCCTG

Start	P-value		Site
363	2.60e-05	AGTCGCTCAC	GCCCTG	ACCAAAGTTT
127	2.60e-05	AACACATAAA	GCCCTG	TAGGTTCCGA

Motif GTKRRCGASWTS

Start	P-value		Site
481	1.76e-08	AAATATTCGG	GTGGGCGACTTC	TTAAACGATT
379	4.02e-07	ACCAAAGTTT	GTGAACGACATC	ATTCAAAGAA
60	8.69e-07	TAGCTAACTT	GTTAGCGAGTTG	GTTGGACTTG

Motif CCAASTC

Start	P-value		Site
107	1.41e-05	CAAGAAAGTA	CCAACTC	AACAACACAT
310	3.36e-05	TCTGATTAGA	CCAAGTC	TTTTGATAGT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000237	100.0	506	0	0	1	506	1	506	935
pORI00000288	98.004	501	8	2	1	500	1	500	869
pORI00001043	97.991	448	7	2	54	500	473	27	776
pORI00001043	98.726	157	2	0	1	157	623	467	279
pORI00000027	98.266	173	3	0	9	181	206	378	303
pORI00000027	85.185	216	24	7	287	497	531	743	215