DoriC

RefSeq

NC_001393

DoriC accession number

pORI00000288

OriC length

526 nt

OriC AT content

0.6844

The location of oriC region

3763..4288 nt

Browse in NCBI

OriC map

OriC sequences

AACATGCATTTATGCCGAGAAAACTTATTGGTTGGAATGGGCTATGTGTTAGCTAACTTGTTAGCGAGTTGGTTGGACTTGAATTGGGATTAATCCCAAGAAAGTACCAACTCAACAACACATAAAGCCCTGTAGGTTCCGACCAATAAGGAAATTGGAATAAAGCAATAAAAGGAGTTGAAGAAATGAAATTCAGAGAAGCCTTTGAGAATTTTATAACAAGTAAGTATGTACTTGGTGTTTTAGTAGTTTTAACTGTTTACCAGATAATACAAATGCTTAAATAAAAAAAGACTTGATCTGATTAGACCAAATCTTTTGATAGTGTTATATTAATAACAAAATAAAAAGGAGTCGCTCACGCCCTGACCAAAGTTTGTGAACGACATCATTCAAAGAAAAAAACACTGAGTTGTTTTTATAATCTTGTATATTTAGATATTAAACGATATTTAAATATACATCAAGATATATATTTGGGTGAGCGATTCCTTAAACGAAATTGAGATTAAGGAGTCGATTTTTT

AT-rich region

The information of repeat sequences

Motif GGAGTYG

Start	P-value		Site
513	1.84e-05	TTGAGATTAA	GGAGTCG	ATTTTTT
351	1.84e-05	AAAATAAAAA	GGAGTCG	CTCACGCCCT
174	6.20e-05	AGCAATAAAA	GGAGTTG	AAGAAATGAA
75	1.48e-04	CGAGTTGGTT	GGACTTG	AATTGGGATT
65	1.48e-04	AACTTGTTAG	CGAGTTG	GTTGGACTTG

Motif GCCCTG

Start	P-value		Site
363	2.37e-05	AGTCGCTCAC	GCCCTG	ACCAAAGTTT
127	2.37e-05	AACACATAAA	GCCCTG	TAGGTTCCGA

Motif GSATTWATSCCRAG

Start	P-value		Site
6	4.53e-09	AACAT	GCATTTATGCCGAG	AAAACTTATT
87	2.70e-08	ACTTGAATTG	GGATTAATCCCAAG	AAAGTACCAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000288	100.0	526	0	0	1	526	1	526	972
pORI00001043	99.789	473	1	0	54	526	473	1	869
pORI00001043	98.726	157	2	0	1	157	623	467	279
pORI00000237	98.004	501	8	2	1	500	1	500	869
pORI00000027	98.266	173	3	0	9	181	206	378	303
pORI00000027	83.74	246	24	11	287	526	531	766	219