RefSeq NC_016975
DoriC accession number pORI00000285
OriC length 412 nt
OriC AT content 0.5728
The location of oriC region 7489..296 nt
Browse in NCBI
OriC map
OriC sequences
GACAAACTCCTCAGTCGGTTTTCCACAATTCTACCAGATTCAGCAGATACTAGACAGGTTCTTAGGGAGCGAAGCGACCAGGGGTTGGTATGGGGTTTGGGGAGAGGTTCTCCCCAAGATCTTTTGTGGTTGTTAACAAGCAAAACACAAACACAAGCCTCGCGCGCATTATATATACTTCTAAATACTTCTAAATACTTTAAGTACTTAGGGCGACGAGAATGGCTCAACCACGCGTTTAAAATGGCCAATAGGTCACCAAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTCACCAAAAGTACCAGTTGTGTTGATTATTGTAACCTTTAAATGTAAAGTGTCTCTGAGGTGAAAATTT
GACAAACTCCTCAGTCGGTTTTCCACAATTCTACCAGATTCAGCAGATACTAGACAGGTTCTTAGGGAGCGAAGCGACCAGGGGTTGGTATGGGGTTTGGGGAGAGGTTCTCCCCAAGATCTTTTGTGGTTGTTAACAAGCAAAACACAAACACAAGCCTCGCGCGCATTATATATACTTCTAAATACTTCTAAATACTTTAAGTACTTAGGGCGACGAGAATGGCTCAACCACGCGTTTAAAATGGCCAATAGGTCACCAAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTCACCAAAAGTACCAGTTGTGTTGATTATTGTAACCTTTAAATGTAAAGTGTCTCTGAGGTGAAAATTT
AT-rich region
The information of repeat sequences

Motif CGATAGGTCACCAAAAAGCAC

StartP-valueSite
3155.90e-13AAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTC
2935.90e-13AAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTC
2715.90e-13AAAAAGCACACGATAGGTCACCAAAAAGCACACGATAGGTC
2493.85e-12TTAAAATGGCCAATAGGTCACCAAAAAGCACACGATAGGTC
3371.87e-11AAAAAGCACACGATAGGTCACCAAAAGTACCAGTTGTGTTG

Motif GDGGTTSTTANSRAG

StartP-valueSite
559.43e-08AGATACTAGACAGGTTCTTAGGGAGCGAAGCGACC
1261.32e-07AAGATCTTTTGTGGTTGTTAACAAGCAAAACACAA
813.40e-07GAAGCGACCAGGGGTTGGTATGGGGTTTGGGGAGA
1043.83e-07GGTTTGGGGAGAGGTTCTCCCCAAGATCTTTTGTG

Motif TAAATACT

StartP-valueSite
1923.59e-05TAAATACTTCTAAATACTTTAAGTACTT
1823.59e-05TATATACTTCTAAATACTTCTAAATACT
1728.45e-05GCGCGCATTATATATACTTCTAAATACT
2011.07e-04CTAAATACTTTAAGTACTTAGGGCGACG
441.92e-04CCAGATTCAGCAGATACTAGACAGGTTC
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000285 100.0 412 0 0 1 412 1 412 0.0 761
pORI00000285 100.0 58 0 0 295 352 251 308 1.06e-24 108
pORI00000285 100.0 58 0 0 251 308 295 352 1.06e-24 108
pORI00000285 100.0 36 0 0 317 352 251 286 1.79e-12 68
pORI00000285 100.0 36 0 0 251 286 317 352 1.79e-12 68
pORI00000441 85.185 297 41 3 62 356 357 62 0.0 302
pORI00000388 92.754 69 5 0 59 127 3741 3809 1.77e-22 100
pORI00000489 92.308 65 4 1 59 123 312 375 1.06e-19 92
pORI00000367 92.308 65 4 1 59 123 312 375 1.06e-19 92