DoriC

RefSeq

NC_006257

DoriC accession number

pORI00000388

OriC length

4122 nt

OriC AT content

0.5662

The location of oriC region

1666..852 nt

Browse in NCBI

OriC map

OriC sequences

GCTCTGAACTAGTGGAAGTGCGAAAGCACACAAAATCCCGCCAAATTCTATATATCTATTGCGCGATGCTGTGCACCTTCAAGAACGGGTGTGATTGGGATGGTTTTCCAAATTCATTATAGAAAGATTGCAGTCCGTAATGAAGTTCCAATAACAATTAGTTGTAAGCGTCAACATAGTAGTATTTATAAAATTTACTGAGTTGATTGCGAAAGATACTGAACGGGTCTTAGATGAACTAGACGGCAACACAACCGCTATCCTGTATGCGCCTGAAAGCCTACCAGAGGCACACCCATTTAGCTATCATTCACCAACTTAATACAGACAACTTTCCGTTATGGAATCCGCCCAGTTAACGTAATGGTGCTTAGCAGCAGTGCTCGCCCCACCTGGTTCACAACCTACCACTTTGTGAATATTGAACGAGTTACCCCATAGTAGCGTGCCCTAGTGGGTTTTCTAACTTGAATGCCTAGTGAAATAGCCACGATAGCTACCGTGGCTATTTGTTACTTTCCAGTGCCAAACAATCTCTGCCAAAAAGACGGCGGCTGTTCTGGACTACTTTCAGCCTTTCCAGGCGCTTCTGGCTCTCGTTCATTCGTTTGTTCAGAATCACTCTCAGGTTCGTCTTGGGGAAATTCTAGCTTCTTAAGCTTGTTCTCAGCCATTAGTTGGAGTTGCTGGGATTGATCAAGCAGCTTGTGTAATTCCTTTATTTGCTCGTCTTTAGCACTCAACTGGCTAGTGCTTGCCTTTAATTGTCCCTTAAGAACACTAATCATGGCGCTTGGATCAATTATCTCAGAACGACTTTCGGACTTAGTAGCGTCTTCTTGCCTCTGCTTGACGCTACTTGCGTTACCTTGTTCTTTACTTCGATTAACAGGATTGCCGTAAAACAATGATTTTATAGCATTTTCAGAGATTGCGTTGATTTCGTAGCGTCCGCTTGCCTTTTGTGGCCTCTTGCTAGCGGGAAGTTGCCTTATAATCTGCTGAACCCTTTGTCGGCTTACGTTTAACTCGTCTGCTATCTGTTTCGCTGACTTGCTCATGATTGCCTCCTTCGTTCTAATGCCGATTATAGCAACGGCTACGAATAGTTGCCCATAAAAATGCCCGAAACGATCTTAGAAATCGTTTCGGGTCACTTATTTGAATCGAATTTTAGGCTTTGTTTCGAGACGTTTCCGGGCAATCCGTTAGGGTAGACTTTAATGTAAGGACTTGGTGTCTCTCTTTTTTTCCCATTTTTCAAACTCTGCAGTTAAGTCCCGATCGGTAACTAAGCCTTCGACCAAATCTTTCGGAATAAGGTTATAAGTTTCTGATAGAAATTTGTATGCACTCATAACTTTCTCAAATTGGCGGCTATTATAGTCATAACTGACGGTCAATCTTGGTCGGATTTTAGCGTTAACGACCAATTGGACTTTAAACACGAAACTATTATTTTCCTGACCCAGACTAATTTTATACAAAGAATCTTTCGGATGGTATATACCTTCTGTTGAGATTGTTACATAGATGTTGGGGATAAATACTCTGGACATATAACTTACGCTTTCTGCGCAGGGTTGAGAGTCACGTCTTGCGCCTTTGGTTAGTCTAACTATCTCTCGTAAATAGTATATATCAGTTGAGTGACACTCGCAAGGACTTTTTTCCCCCCGATTGGAAAAAGCAAAAATCGTAGATCAATTTGTTTTAAAACCAATCAAAGAAGAATTAACTCCTTTGTTCGGTGGACTAACAATCCGCAAGAAATACGATGAGGGACGCGGCAAGCTAGTCATCGCTTATGTATTCGCTTGGGAAGCAAGCGTAAAGACGCTGAGGACGTGCACGTCAGCAAGCAACGGCGAGTTGACCGACAAAGAAAAGTGGCGCGCACTCGACAAAGTTCGCGGCGTCAAACTAGGCACAACCGAGCAAGAATACCTCGCCAAAAAATAAAAAGAGCACGACGAAGAAATCGCAAAAAAAGCGAAGCAAGAAGTGCTCGGACAGCTCAAAAATAATTGGCATTAGCTCAGCGTTTTTCTCCAGGAAAAGATCAAAACAAAATGAGTTGCAATCCGATCGTCCTAAAAAATAGCCCGATCGAAACGATCACTTTTTGAGGGTGGTTTGACAGGTCCTAAAATCAAGAAAGAGCATAAGGCAAAACTGACCCCAAAATTGGCGTAAACCGCAGTGCGGTTTGGTTTGTCGTGATAGCACGCTGGGGGCAAAAGGTGTAGTAAAACGCGATATGCTCCACGTGAAAAAATCTCGAGCGTGTAGTAAACCGCGTTTTACTACACGTGGTTTAGGCTAATCGTGACAAGGGTTAGCGCCATTCACTACACGTAAACGACGTTTTACTACACCTGAGCAAGTTTATTCGCATTTTGGTCATAAACGAGCGCGTTTTGGCGTTACATCGTCCGCACCTAGACGGTGCATTGGACGCAACACTAAATACACGATATGAGATGCACAAGTTGAAGCGTTAGTGTTGATCATCGCACAGTTTAGATGTTACAGTTGACTCAATGATTTTTATGCTCATTAAGCATCACCAACGCTTCGAATTAATCATCTCTAATAGTGAGTTTTATGTTGCGTCCAATGCACCGTCTAGGTGCACACTATGTAACACAAAAAATGAGTGCTCACTCACCGACAACCTCCATTCTTGCTAAATGTTGAATATTGCAAAGAAATCCAACACTGATCTCTGTAAGCCAAATGGCCCTTAGGGCCATAGTCTATCGTCAAATGTTGAATTTTCTTCTAAAATCCAACATTGCCTATTTTGCTAATGTTGGATTTCGCGTAAATATTCAACATTTCGACCCCAGCGTGCTATCACGACAAACCAAACCGCACTGCGGTTTACGCCAATTTTGGGGTCAGTTTTGCCTTATGCTCTTTCTTGATTTTAGGACCTGTCAAACCACCCTCAAAAAGTGATCGTTTCGATCGGGCCGTTTTTGAGGTCGATCAGATCGCAACTCATTTTGTTTTGATCTCTTACCTGGAGAAAAACGCTCACGTTTTGACCTGGGTAGGCGCAACTGTTTGCAAAAAAATCGTCCGGCAACGTGACGCAATTTTGACGTCGTGTTGGTTTGCCAGACGACAGATCACCATCACAACTCAGGAGGTTTTTGAAATGACGAAGCAAGAAGAAACTCGCCGGATTATGTTCACTTTGCCCGACCAGGCAATCGATAAATTAGATCAGCTAGTAGCAAAAAAGCAGGAGGAGGTCGATCAGGATCCGAAGCTCGCCAAGTACCACGTCAAGGTCACTAAGTCGACTATTTTGGTGGACCTGTTAGCCGAGCAGTAAAACCGGCAATCGATCAGTTGTCGGTTGAAGCGTTTCTGTGCTAAAAATATGGATACAAACAGGGAGCAACCCCAAAAAAGAGTGCTCTCTTAGCAGAGCCGTTAAAGGCAGAACAGCCGCACTCCCAGTATCTCGGGAATGCGGCCGTTTTGTCTTTAATGCTATTGCTGGTAAACGCTTCAGCTAACAAAACACCTTAGGACGCAAATATGGACTTCTGAGAGCCTTTCAGCTGTCTGATGTATCTCTGCAGTATCCGTATTTGCTCGTGAATGGCCGTGTAAGCCCTCCGAGCCCGTAGGCGAGGTTTGTTCTGAACCACGCAAGCGAAGCGCGCTAGGGAAAGCCAGAGGCGCGCAGGCGGAGCCGGAGTTAAACGTGGCGAAGCCACACCTTTTTAGGGAGCGAAGCGACCAAGTGTTGGTATGGGGTTTGGGGAGAGGTTCTCCCCAAGGTCTTATGTTGTATTTTTACGTGGAAAAAGTTGGCTCAAGCGTTTTTTTTTTTTTGCCTCGCGCGTATGTAATTACATTGTCCTATACATTTTAATTACATTTAAATACATTAGGGGGGCACGAACGCTTTAATGGCGGCGTTATCGTGGCACTAAAATACCTTTTTCCACGTTGAAAATACTTTTTTCCACGTTGAAAATACCTTTTTCCACGTTGAAAATACTTTTTTCCACGTTGAAAATACCTTATATGTAATATAAACTTAAAGTGAGTATTTTAGGAATTGGGGGTATCTAGTTGGCACTTACATCAAACAAAAAA

AT-rich region

The information of repeat sequences

Motif AAAATACYTTTTTCCACGTTG

Start	P-value		Site
3997	5.02e-13	TTCCACGTTG	AAAATACCTTTTTCCACGTTG	AAAATACTTT
3955	5.02e-13	TCGTGGCACT	AAAATACCTTTTTCCACGTTG	AAAATACTTT
4018	1.16e-12	TTCCACGTTG	AAAATACTTTTTTCCACGTTG	AAAATACCTT
3976	1.16e-12	TTCCACGTTG	AAAATACTTTTTTCCACGTTG	AAAATACCTT

Motif GGABMDAAACGABCACGTTTTGRBVTKGG

Start	P-value		Site
3031	1.42e-14	TCTCTTACCT	GGAGAAAAACGCTCACGTTTTGACCTGGG	TAGGCGCAAC
3748	3.05e-13	ACCTTTTTAG	GGAGCGAAGCGACCAAGTGTTGGTATGGG	GTTTGGGGAG
2107	3.61e-13	AAAAATAGCC	CGATCGAAACGATCACTTTTTGAGGGTGG	TTTGACAGGT
2402	1.63e-12	TTCGCATTTT	GGTCATAAACGAGCGCGTTTTGGCGTTAC	ATCGTCCGCA

Motif GWGHAGTAAAMCVCGHTWTVCTHCACBTG

Start	P-value		Site
2287	1.59e-17	AATCTCGAGC	GTGTAGTAAACCGCGTTTTACTACACGTG	GTTTAGGCTA
2244	4.98e-15	GGGGCAAAAG	GTGTAGTAAAACGCGATATGCTCCACGTG	AAAAAATCTC
2353	3.71e-12	CGCCATTCAC	TACACGTAAACGACGTTTTACTACACCTG	AGCAAGTTTA
3338	9.62e-12	CCTGTTAGCC	GAGCAGTAAAACCGGCAATCGATCAGTTG	TCGGTTGAAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000388	100.0	4122	0	0	1	4122	1	4122	0.0	7613
pORI00000388	95.939	197	7	1	2847	3043	2236	2041	0.0	318
pORI00000388	94.66	206	10	1	2041	2245	3043	2838	0.0	318
pORI00000388	100.0	52	0	0	3997	4048	3955	4006	2.38e-20	97
pORI00000388	100.0	52	0	0	3955	4006	3997	4048	2.38e-20	97
pORI00000388	80.0	90	14	3	2568	2655	2506	2419	2.42e-10	64
pORI00000388	79.57	93	15	3	2419	2509	2655	2565	2.42e-10	64
pORI00000441	83.043	460	76	2	2841	3299	1155	697	0.0	416
pORI00000441	84.062	389	58	4	2043	2428	954	1341	0.0	372
pORI00000441	90.083	121	10	2	3699	3819	402	284	3.88e-38	156
pORI00000489	92.357	157	9	3	3650	3805	221	375	0.0	220
pORI00000367	92.357	157	9	3	3650	3805	221	375	0.0	220
pORI00000285	92.754	69	5	0	3741	3809	59	127	1.84e-21	100