DoriC

RefSeq

NC_008357

DoriC accession number

pORI00000018

OriC length

1656 nt

OriC AT content

0.3702

The location of oriC region

11639..13294 nt

Browse in NCBI

OriC map

OriC sequences

CGGACTTTCTCCGGTAGTTGACCTGGGCGGAATGCCCGGCCTCAAGACCAATATTAGGGCATTATGCCCTAGCCTGTCAAGCAAATTTAGCTAAACTATGCCGCCGGCCGTACCCGATTCTGCGGTTACAGCTCGGTCCTGGTCCCGACCGGGCTTTGCCAGGCGGGCGGATGGAACGCCAAGGGGGAGCGCGGCCGTTGAATGGTGATCGCCATCACGTTTCATTGACACTTGAGGGGCGTTTAGAGCGAGCCAGGAAAGCCGACCCCCTCCTTGGAGTAAAAACCCTTGCGGCGTTGCAGCCGGCACGGATCTTCCGATCGGGCGCGGTGGTGGCCGCGTCTGTGACCTAAAAAGGGGGGAGTCCAGAGGGGCGCAGCCCCTTTGGGCATAGCGCAGCGTAATCGGAGACGTAATTGAGCATTTCCAGGCGCTTGCGCCTGGTCAACGAAAGAGTCAGCGCCGTAGGCGCTGCCATTTTTGGGGTGAGGCCGTTCGCGGCCGAGGGGCGCAGCCCCTGGGGGGATGGGAGGCCCGCGTTAGCGGGCCGGGAGGGTTCGAGAAGGGGGGGCACCCCCCTTCGGCGTGCGCGGTCACGCGCACAGGGCGCAGCCCTGGTTAAAAACAAGGTTTATAAATATTGGTTTAAAAGCAGGTTAAAAGACAGGTTAGCGGTGGCCGAAAAACGGGCGGAAACCCTTGCAAATGCTGGATTTTCTGCCTGTGGACAGCCCCTCAAATGTCAATAGGTGCGCCCCTCATCTGTCAGCACTCTGCCCCTCAAGTGTCAAGGATCGCGCCCCTCATCTGTCAGTAGTCGCGCCCCTCAAGTGTCAATACCGCAGGGCACTTATCCCCAGGCTTGTCCACATCATCTGTGGGAAACTCGCGTAAAATCAGGCGTTTTCGCCGATTTGCGAGGCTGGCCAGCTCCACGTCGCCGGCCGAAATCGAGCCTGCCCCTCATCTGTCAACGCCGCGCCGGGTGAGTCGGCCCCTCAAGTGTCAACGTCCGCCCCTCATCTGTCAGTGAGGGCCAAGTTTTCCGCGAGGTATCCACAACGCCGGCGGCCGCGGTGTCTCGCACACGGCTTCGACGGCGTTTCTGGCGCGTTTGCAGGGCCATAGACGGCCGCCAGCCCAGCGGCGAGGGCAACCAGCCCGGTGAGCGTCGGAAAGGCGCTGGAAGCCCCGTAGCGACGCGGAGAGGGGCGAGACAAGCCAAGGGCGCAGGCTCGATGCGCAGCACGACATAGCCGGTTCTCGCAAGGACGAGAATTTCCCTGCGGTGCCCCTCAAGTGTCAATGAAAGTTTCCAACGCGAGCCATTCGCGAGAGCCTTGAGTCCACGCTAGATCTATCTCATCTGCGCAAGGCAGAACGTGAAGACGGCCGCCCTGGACCTCGCCCGCGAGCGCCAGGCGCACGAGGCCGGCGCGCGGACCCGCGCCACGGCCCACGAGCGGACGCCGCAGCAGGAGCGCCAGAAGGCCGCCAGAGAGGCCGAGCGCGGCCGTGAGGCTTGGACGCTAGGGCAGGGCATGAAAAAGCCCGTAGCGGGCTGCTACGGGCGTCTGACGCGGTGGAAAGGGGGAGGGGATGTTGTCTACATGGCTCTGCTGTAGTGAGTGGGTTGCGCTCCGGCAGCGGTCCTGA

AT-rich region

The information of repeat sequences

Motif GCCCCTCAAGTGTCAA

Start	P-value		Site
1291	2.00e-10	TCCCTGCGGT	GCCCCTCAAGTGTCAA	TGAAAGTTTC
994	2.00e-10	GGGTGAGTCG	GCCCCTCAAGTGTCAA	CGTCCGCCCC
776	2.00e-10	TCAGCACTCT	GCCCCTCAAGTGTCAA	GGATCGCGCC
731	3.18e-10	CCTGTGGACA	GCCCCTCAAATGTCAA	TAGGTGCGCC
959	9.41e-10	AATCGAGCCT	GCCCCTCATCTGTCAA	CGCCGCGCCG

Motif CGCCCCTCATCTGTCAGTA

Start	P-value		Site
798	2.76e-12	TCAAGGATCG	CGCCCCTCATCTGTCAGTA	GTCGCGCCCC
1014	2.00e-11	TGTCAACGTC	CGCCCCTCATCTGTCAGTG	AGGGCCAAGT
753	2.00e-11	TCAATAGGTG	CGCCCCTCATCTGTCAGCA	CTCTGCCCCT
821	5.57e-11	TCAGTAGTCG	CGCCCCTCAAGTGTCAATA	CCGCAGGGCA

Motif HMATYBGNGRGADACTBGHGYAAAHGCWGGHKHTWNCGCMKGTKNRC

Start	P-value		Site
872	5.47e-19	CTTGTCCACA	TCATCTGTGGGAAACTCGCGTAAAATCAGGCGTTTTCGCCGATTTGC	GAGGCTGGCC
683	5.37e-16	CGGTGGCCGA	AAAACGGGCGGAAACCCTTGCAAATGCTGGATTTTCTGCCTGTGGAC	AGCCCCTCAA
402	2.83e-15	TAGCGCAGCG	TAATCGGAGACGTAATTGAGCATTTCCAGGCGCTTGCGCCTGGTCAA	CGAAAGAGTC
627	4.06e-15	GGTTAAAAAC	AAGGTTTATAAATATTGGTTTAAAAGCAGGTTAAAAGACAGGTTAGC	GGTGGCCGAA
1326	1.86e-14	CCAACGCGAG	CCATTCGCGAGAGCCTTGAGTCCACGCTAGATCTATCTCATCTGCGC	AAGGCAGAAC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000018	100.0	1656	0	0	1	1656	1	1656	0.0	3059
pORI00000006	100.0	302	0	0	1355	1656	302	1	0.0	558
pORI00000088	76.052	309	54	14	731	1029	685	983	1.21e-34	143
pORI00000196	82.609	138	14	7	1131	1267	940	1068	9.47e-26	113