RefSeq NC_005088
DoriC accession number pORI00000088
OriC length 1256 nt
OriC AT content 0.3997
The location of oriC region 66904..1093 nt
Browse in NCBI
OriC map
OriC sequences
CGGAACTCTCCGGTAGTTGACCTGGGCGACATGCCCGGCCTTCAAGACGTATATTAGGACAAAATGTCCTAACCTGTCAAGCACTTTAGCTAAACTTTAGCCGCTAAACTGTTCTACGGCGGGCAGGACTACGAGACGATCCTGCACGACGACGCGGACGACTGAATTCCCCCGCTTCTTGACACTTGAGGGGCGCAATCACGCCCTGGGCCTGGCAGGCCGACCCCTCCCTTGGCGTTCAACCTTGCGGCCTTCGAGCTGGAGCCATCTTCCGACTTGGCGACGGCGCAGGAGTCACCGCGGCCTTGACAGTTGGGGAGTCCAGAGGGGGCCTTGGCCCCCTTTGGAAGAGCACGAACTTCTGCCAGGCGCTTGCGCCTGGCTATGGTCAGCCGTAGCGCCGTAGGCGCTCCATTCTTGGGGTGAAGGCCGTAGGCCGAGGGGCAACGCCCCTGGGGGGATGGGAGGCCGCTTTAGCGGCCGGGTGGGATCGAGAAGGGGGGGCACCCCCCTTCGGCGGCCGATCATTCTGCGGGGGCACCTTGGGCCGGTTTGCCGCTTTTTTCGACACCGGGTTATAACAACTAGGTTTAATATAAAGGTTATGAAGGGTTAAAAGCCGGTTAGCTTGACCGGAAAACGCGCGCAAGCCGTTGATACGCCAAGGAAAAGGCTCGAAGGGCCGCCCCTCAAGTGTCAATGGATAAGCCCCTCAAGGGTCAATAGTCTGCCCGTCAAGTGTCAAGGATCGCGCCCCTCATCTGTCAGCACCCCCGCCCCTCAAGTGTCAGTACGGCAAGGGCCTTGCCAACAGGCTTATCCACAACTTCTGTGGATAAAGCCAGCCCGATCAAGCACATAGGCCGCCTCGACGGCCTCCGGCGCGGCTCCAGCCGGCCGATTTCGAGGCCGGCCCCTCATCTGTCAGCATCGCGCCGGGGTGCGCTGCCCCCCAAGTGTCAAGAAACGCCCCTCAACTGTCACCAGCCGGCGTTTGTCCCCAAACGATCCACAAGGCCGACCAGGCAGCGCCGGCCCTCTATGGCCCCGAGAAGGGCCAGAAAGGGGTCGCCTCAGAAAACGGAAAATAAAGCACGCTAAGCCCTTACTTGGGGTCTCCTCGTTTTCAGTGCAATAAGTGACGGTACGCAAAGCTAGCACTGGCGCGGGGGTGGTCTGGGTAGACCGTTGATTTCATTGACTTTCCTGTTCGCTTTGTAAACGGGTATGGTGGCCTCCCACTTTTGAGGTTCACG
CGGAACTCTCCGGTAGTTGACCTGGGCGACATGCCCGGCCTTCAAGACGTATATTAGGACAAAATGTCCTAACCTGTCAAGCACTTTAGCTAAACTTTAGCCGCTAAACTGTTCTACGGCGGGCAGGACTACGAGACGATCCTGCACGACGACGCGGACGACTGAATTCCCCCGCTTCTTGACACTTGAGGGGCGCAATCACGCCCTGGGCCTGGCAGGCCGACCCCTCCCTTGGCGTTCAACCTTGCGGCCTTCGAGCTGGAGCCATCTTCCGACTTGGCGACGGCGCAGGAGTCACCGCGGCCTTGACAGTTGGGGAGTCCAGAGGGGGCCTTGGCCCCCTTTGGAAGAGCACGAACTTCTGCCAGGCGCTTGCGCCTGGCTATGGTCAGCCGTAGCGCCGTAGGCGCTCCATTCTTGGGGTGAAGGCCGTAGGCCGAGGGGCAACGCCCCTGGGGGGATGGGAGGCCGCTTTAGCGGCCGGGTGGGATCGAGAAGGGGGGGCACCCCCCTTCGGCGGCCGATCATTCTGCGGGGGCACCTTGGGCCGGTTTGCCGCTTTTTTCGACACCGGGTTATAACAACTAGGTTTAATATAAAGGTTATGAAGGGTTAAAAGCCGGTTAGCTTGACCGGAAAACGCGCGCAAGCCGTTGATACGCCAAGGAAAAGGCTCGAAGGGCCGCCCCTCAAGTGTCAATGGATAAGCCCCTCAAGGGTCAATAGTCTGCCCGTCAAGTGTCAAGGATCGCGCCCCTCATCTGTCAGCACCCCCGCCCCTCAAGTGTCAGTACGGCAAGGGCCTTGCCAACAGGCTTATCCACAACTTCTGTGGATAAAGCCAGCCCGATCAAGCACATAGGCCGCCTCGACGGCCTCCGGCGCGGCTCCAGCCGGCCGATTTCGAGGCCGGCCCCTCATCTGTCAGCATCGCGCCGGGGTGCGCTGCCCCCCAAGTGTCAAGAAACGCCCCTCAACTGTCACCAGCCGGCGTTTGTCCCCAAACGATCCACAAGGCCGACCAGGCAGCGCCGGCCCTCTATGGCCCCGAGAAGGGCCAGAAAGGGGTCGCCTCAGAAAACGGAAAATAAAGCACGCTAAGCCCTTACTTGGGGTCTCCTCGTTTTCAGTGCAATAAGTGACGGTACGCAAAGCTAGCACTGGCGCGGGGGTGGTCTGGGTAGACCGTTGATTTCATTGACTTTCCTGTTCGCTTTGTAAACGGGTATGGTGGCCTCCCACTTTTGAGGTTCACG
AT-rich region
The information of repeat sequences

Motif GCCCCTCAWSTGTCA

StartP-valueSite
9691.32e-09GTCAAGAAACGCCCCTCAACTGTCACCAGCCGGCG
9133.90e-09TTCGAGGCCGGCCCCTCATCTGTCAGCATCGCGCC
7763.90e-09CAGCACCCCCGCCCCTCAAGTGTCAGTACGGCAAG
7533.90e-09CAAGGATCGCGCCCCTCATCTGTCAGCACCCCCGC
6853.90e-09TCGAAGGGCCGCCCCTCAAGTGTCAATGGATAAGC

Motif MWGSYCCTCAAGKGTCAA

StartP-valueSite
7061.48e-10GTCAATGGATAAGCCCCTCAAGGGTCAATAGTCTGCCC
7282.21e-09GGTCAATAGTCTGCCCGTCAAGTGTCAAGGATCGCGCC
9465.63e-09CCGGGGTGCGCTGCCCCCCAAGTGTCAAGAAACGCCCC
5993.92e-08GTTTAATATAAAGGTTATGAAGGGTTAAAAGCCGGTTA
634.53e-08ATTAGGACAAAATGTCCTAACCTGTCAAGCACTTTAGC

Motif ACTTBWGNGGHTMAA

StartP-valueSite
8262.22e-08CTTATCCACAACTTCTGTGGATAAAGCCAGCCCGA
943.54e-08CTTTAGCTAAACTTTAGCCGCTAAACTGTTCTACG
12419.35e-08GTGGCCTCCCACTTTTGAGGTTCACG
1843.09e-07GCTTCTTGACACTTGAGGGGCGCAATCACGCCCTG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000088 100.0 1256 0 0 1 1256 1 1256 0.0 2320
pORI00000196 79.248 824 112 42 173 963 28 825 0.0 520
pORI00000018 76.052 309 54 14 685 983 731 1029 9.12e-35 143