DoriC

RefSeq

GCF_000220705.2

Accession number

NZ_CP023202.1

DoriC accession number

ORI97013894

OriC length

1040 nt

OriC AT content

0.302885

The location of oriC region

3546546..3547585 nt

Browse in NCBI

OriC map

OriC sequences

dnaACGGACCGCGCGGCCGCCGCGGCGGTACGAGAGGGCGCCCCCGGGAGTACGGCTCCGGGGGGCGCCTTCGGCGTTCCCCGGCCCGTGCCGGCTCCGGCCCGGGCCGCCCGGGTCGCCGGGCCGCGGTGCGCGCCCCGCGGCCCGGGGCGCGCCTTTCCCCGGCCGTCCACGGCCTTCCTGGCCTCTCCCGTGCGCGTCCCCGTTCCCTCTCCCCGCGCGCCTCCGCGCCGGTTCCGGCTTCCCCGGGGAGGTGCGTACACCGCACGCACGTCCCGGCGGCCGTGCTCCGCGCGTCCCGGCGCTGTTCGAATACGTGCCGCCGCAGGGCGGTTCTCCACAGCGGATGGGCAAATGGACCGTCCACACCCTGGGGAGAGGGAAGTTGTCCAGATCTTGTCCACAGCCGGCCCCGTGTGAGGGCGGCACCGGGAGGTCAAGCGCCTGTGGACTTGTGGCTATCCGGTCTCCACAGACTGTGGAGGAACAGCCCGGCCCGCGCGCGACGGTCCGGTTGTCCACCGCCTGCCCACAGGGAAGACCCTGTTGTGCACAGCCTTTCCACACCGTTGTCCACTGTTCGGCAACACAACACCCCTCGTCACCGACAAGAGTGAACTGCATCACATCAACGCGCCGGATTGGGCTGTGCAGAACCTGGGTAAAACTGGGGACGCCGCTGGGGAGAACCCGCCCTTCCCTGTGTACGGCGTGTGCAGAACTCTTCCCCGTCCACAGGACCGGTGAGTTGTCCACCGGTCCCGCCCACAGGACCCGTGGACAAAAAACAGCTGCTGAGCTGCGAAAAGCGGGTTATCCACGGTTTCCACAGGCCCTACTACTACGACCACGTAGTTACAGGGGGAAATCCGTTTCGAAGTGGGGCCTGTGCACAACTCGCCCTCGGGCCGCGCCACGCCTCCCGGCCCGACTTGACCCCGGAGCGCACCGAGTGTCCGTGGTGTGCGTCAGACTGGACCGGCGGCACACAGCCGACGACGAAGGCCAGCAGGGCGAGCCAGCAACAGCAGGAGGCGGCTTACGdnaN

dnaaCGGACCGCGCGGCCGCCGCGGCGGTACGAGAGGGCGCCCCCGGGAGTACGGCTCCGGGGGGCGCCTTCGGCGTTCCCCGGCCCGTGCCGGCTCCGGCCCGGGCCGCCCGGGTCGCCGGGCCGCGGTGCGCGCCCCGCGGCCCGGGGCGCGCCTTTCCCCGGCCGTCCACGGCCTTCCTGGCCTCTCCCGTGCGCGTCCCCGTTCCCTCTCCCCGCGCGCCTCCGCGCCGGTTCCGGCTTCCCCGGGGAGGTGCGTACACCGCACGCACGTCCCGGCGGCCGTGCTCCGCGCGTCCCGGCGCTGTTCGAATACGTGCCGCCGCAGGGCGGTTCTCCACAGCGGATGGGCAAATGGACCGTCCACACCCTGGGGAGAGGGAAGTTGTCCAGATCTTGTCCACAGCCGGCCCCGTGTGAGGGCGGCACCGGGAGGTCAAGCGCCTGTGGACTTGTGGCTATCCGGTCTCCACAGACTGTGGAGGAACAGCCCGGCCCGCGCGCGACGGTCCGGTTGTCCACCGCCTGCCCACAGGGAAGACCCTGTTGTGCACAGCCTTTCCACACCGTTGTCCACTGTTCGGCAACACAACACCCCTCGTCACCGACAAGAGTGAACTGCATCACATCAACGCGCCGGATTGGGCTGTGCAGAACCTGGGTAAAACTGGGGACGCCGCTGGGGAGAACCCGCCCTTCCCTGTGTACGGCGTGTGCAGAACTCTTCCCCGTCCACAGGACCGGTGAGTTGTCCACCGGTCCCGCCCACAGGACCCGTGGACAAAAAACAGCTGCTGAGCTGCGAAAAGCGGGTTATCCACGGTTTCCACAGGCCCTACTACTACGACCACGTAGTTACAGGGGGAAATCCGTTTCGAAGTGGGGCCTGTGCACAACTCGCCCTCGGGCCGCGCCACGCCTCCCGGCCCGACTTGACCCCGGAGCGCACCGAGTGTCCGTGGTGTGCGTCAGACTGGACCGGCGGCACACAGCCGACGACGAAGGCCAGCAGGGCGAGCCAGCAACAGCAGGAGGCGGCTTACGdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GTTGTSCASAGCYTGBCCACA

Start	P-value		Site
381	8.58e-13	GGAGAGGGAA	GTTGTCCAGATCTTGTCCACA	GCCGGCCCCG
542	7.13e-12	GGAAGACCCT	GTTGTGCACAGCCTTTCCACA	CCGTTGTCCA
510	2.28e-10	CGACGGTCCG	GTTGTCCACCGCCTGCCCACA	GGGAAGACCC
565	4.69e-10	TTTCCACACC	GTTGTCCACTGTTCGGCAACA	CAACACCCCT
642	1.40e-09	GCCGGATTGG	GCTGTGCAGAACCTGGGTAAA	ACTGGGGACG

Motif GKTSTCCA

Start	P-value		Site
809	6.89e-06	CGAAAAGCGG	GTTATCCA	CGGTTTCCAC
329	1.53e-05	CCGCAGGGCG	GTTCTCCA	CAGCGGATGG
744	2.28e-05	GGACCGGTGA	GTTGTCCA	CCGGTCCCGC
818	3.79e-05	GGTTATCCAC	GGTTTCCA	CAGGCCCTAC
461	5.64e-05	GTGGCTATCC	GGTCTCCA	CAGACTGTGG

Motif TGTGSASAACYCGCCCT

Start	P-value		Site
884	7.54e-10	AAGTGGGGCC	TGTGCACAACTCGCCCT	CGGGCCGCGC
677	3.47e-08	GGGACGCCGC	TGGGGAGAACCCGCCCT	TCCCTGTGTA
709	4.67e-08	GTGTACGGCG	TGTGCAGAACTCTTCCC	CGTCCACAGG
474	2.72e-07	CTCCACAGAC	TGTGGAGGAACAGCCCG	GCCCGCGCGC
442	3.69e-07	GTCAAGCGCC	TGTGGACTTGTGGCTAT	CCGGTCTCCA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI95010914	78.816	760	123	36	300	1040	89	829	477
ORI95010941	78.352	619	112	20	427	1034	321	928	381
ORI93010652	75.077	650	114	39	356	976	726	96	259
ORI10010046	77.209	430	86	10	550	973	568	991	241