RefSeq NZ_LT158599.1
DoriC accession number aORI10010327
OriC length 1243 nt
OriC AT content 0.4883
The location of oriC region 2858716..659 nt
Browse in NCBI
OriC map
OriC sequences
TTTACTTCTTTGTATCTCCCGGAAGGGGGTGCGCAATCCCCAACCCCTTTGTTTCGACTGGAACCTGGAAGGGGTCCGGGGTCAGAACCAATGTGGATGAGTGGGAAGAACAGAGGCCTCTGATGGGTGATAAGACTTTCTGAAGAGAGATCCGACGGTTTTTCCTTGATAATCGGTCCTGAGCACCCTGGTTAGATGACCTCCTCCAGGTATCCAGGAAGACCTCACGGTCCGGGCAGGGTATCTTCCCGGGGATGGGGATCAGGTTTCTCCCAGGGACCCCTCCCTTGTGTATCCCAGGTAGCCATAATTTGTCAGCCGGTCTGGTGTGAGCTCCCCCCTCTGTACACAGCCGGCAAAATCAACGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTCAATAAACCGGGTTTATTGTCATTCTTTTTGCATTTTCTTCCCAGTTTCGAACTTTTCTTGTTTTCTGGTTGCTTTCTCTGGCTCTTTTTCTCTTCCAGTACTTCTACGATATATTCTTTATATTCTTGAATTTCAGAGGTACAACATTGAATATTATCATCACGTTTGCATGCACGAGTAGTTCCGGTCATGAGCACCCTGGTTACGGATGACCTCCTCCCACGGTAGTCCAGGAAGACCTCACGGTCCGGGGCAGGGTATCTTCCCGGGGATGGGGGATCAGGTTTCTCCCAGGGACCCCTCCCTTGGTGTATCCCAGGTAGCCATAATTTGTCAGCCGGTCTGGTGTGAGCTCCCCCCTCTGTACACAGCCGGCAAAATCAACGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTCAATAAACCGGGTTTATTGTCATCTTTTTGCATTTTCTTCCCAGTTTCGAACTTTTCTTGTTTTCTGGTGCTTTCTCTGGCTCTTTTTCTCTTCCAGTACTTCTACGATATATCTTTATATCTTGAATTTCAGAGGTACACATGAATATTATCATCACGTTTGCATGCACGAGACAGCCCTGTATCATCATCACTCTCCACTGGAAACAAAGGGGTCGGGGCGTCACCGGGATCACCACTCTGCTATTCTCCACCATTTCACTATCACTCCACAGCCCTCACGGGTCTTCTGCCTGCGATCAACCCCCTCTAAGTTCCACTGGAAACGAAGGGGTTATCTGCCTCAAGAACGATCATATTAAGAGCCCGCGACACGAAAATTTCCTGTCCTGGCAACCTCCCCCGGTGACATC
TTTACTTCTTTGTATCTCCCGGAAGGGGGTGCGCAATCCCCAACCCCTTTGTTTCGACTGGAACCTGGAAGGGGTCCGGGGTCAGAACCAATGTGGATGAGTGGGAAGAACAGAGGCCTCTGATGGGTGATAAGACTTTCTGAAGAGAGATCCGACGGTTTTTCCTTGATAATCGGTCCTGAGCACCCTGGTTAGATGACCTCCTCCAGGTATCCAGGAAGACCTCACGGTCCGGGCAGGGTATCTTCCCGGGGATGGGGATCAGGTTTCTCCCAGGGACCCCTCCCTTGTGTATCCCAGGTAGCCATAATTTGTCAGCCGGTCTGGTGTGAGCTCCCCCCTCTGTACACAGCCGGCAAAATCAACGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTCAATAAACCGGGTTTATTGTCATTCTTTTTGCATTTTCTTCCCAGTTTCGAACTTTTCTTGTTTTCTGGTTGCTTTCTCTGGCTCTTTTTCTCTTCCAGTACTTCTACGATATATTCTTTATATTCTTGAATTTCAGAGGTACAACATTGAATATTATCATCACGTTTGCATGCACGAGTAGTTCCGGTCATGAGCACCCTGGTTACGGATGACCTCCTCCCACGGTAGTCCAGGAAGACCTCACGGTCCGGGGCAGGGTATCTTCCCGGGGATGGGGGATCAGGTTTCTCCCAGGGACCCCTCCCTTGGTGTATCCCAGGTAGCCATAATTTGTCAGCCGGTCTGGTGTGAGCTCCCCCCTCTGTACACAGCCGGCAAAATCAACGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTCAATAAACCGGGTTTATTGTCATCTTTTTGCATTTTCTTCCCAGTTTCGAACTTTTCTTGTTTTCTGGTGCTTTCTCTGGCTCTTTTTCTCTTCCAGTACTTCTACGATATATCTTTATATCTTGAATTTCAGAGGTACACATGAATATTATCATCACGTTTGCATGCACGAGACAGCCCTGTATCATCATCACTCTCCACTGGAAACAAAGGGGTCGGGGCGTCACCGGGATCACCACTCTGCTATTCTCCACCATTTCACTATCACTCCACAGCCCTCACGGGTCTTCTGCCTGCGATCAACCCCCTCTAAGTTCCACTGGAAACGAAGGGGTTATCTGCCTCAAGAACGATCATATTAAGAGCCCGCGACACGAAAATTTCCTGTCCTGGCAACCTCCCCCGGTGACATC
TTTACTTCTTTGTATCTCCCGGAAGGGGGTGCGCAATCCCCAACCCCTTTGTTTCGACTGGAACCTGGAAGGGGTCCGGGGTCAGAACCAATGTGGATGAGTGGGAAGAACAGAGGCCTCTGATGGGTGATAAGACTTTCTGAAGAGAGATCCGACGGTTTTTCCTTGATAATCGGTCCTGAGCACCCTGGTTAGATGACCTCCTCCAGGTATCCAGGAAGACCTCACGGTCCGGGCAGGGTATCTTCCCGGGGATGGGGATCAGGTTTCTCCCAGGGACCCCTCCCTTGTGTATCCCAGGTAGCCATAATTTGTCAGCCGGTCTGGTGTGAGCTCCCCCCTCTGTACACAGCCGGCAAAATCAACGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTCAATAAACCGGGTTTATTGTCATTCTTTTTGCATTTTCTTCCCAGTTTCGAACTTTTCTTGTTTTCTGGTTGCTTTCTCTGGCTCTTTTTCTCTTCCAGTACTTCTACGATATATTCTTTATATTCTTGAATTTCAGAGGTACAACATTGAATATTATCATCACGTTTGCATGCACGAGTAGTTCCGGTCATGAGCACCCTGGTTACGGATGACCTCCTCCCACGGTAGTCCAGGAAGACCTCACGGTCCGGGGCAGGGTATCTTCCCGGGGATGGGGGATCAGGTTTCTCCCAGGGACCCCTCCCTTGGTGTATCCCAGGTAGCCATAATTTGTCAGCCGGTCTGGTGTGAGCTCCCCCCTCTGTACACAGCCGGCAAAATCAACGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTCAATAAACCGGGTTTATTGTCATCTTTTTGCATTTTCTTCCCAGTTTCGAACTTTTCTTGTTTTCTGGTGCTTTCTCTGGCTCTTTTTCTCTTCCAGTACTTCTACGATATATCTTTATATCTTGAATTTCAGAGGTACACATGAATATTATCATCACGTTTGCATGCACGAGACAGCCCTGTATCATCATCACTCTCCACTGGAAACAAAGGGGTCGGGGCGTCACCGGGATCACCACTCTGCTATTCTCCACCATTTCACTATCACTCCACAGCCCTCACGGGTCTTCTGCCTGCGATCAACCCCCTCTAAGTTCCACTGGAAACGAAGGGGTTATCTGCCTCAAGAACGATCATATTAAGAGCCCGCGACACGAAAATTTCCTGTCCTGGCAACCTCCCCCGGTGACATC
ORB     AT-rich region
The information of repeat sequences

Motif SCARVAWSAMCDHAMDKTCCKGDBCAGGTHAYCYHMCCBGG

StartP-valueSite
7813.15e-19TACACAGCCGGCAAAATCAACGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTC
3563.15e-19TACACAGCCGGCAAAATCAACGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTC
6361.19e-17CCACGGTAGTCCAGGAAGACCTCACGGTCCGGGGCAGGGTATCTTCCCGGGGATGGGGGAT
2147.21e-16CTCCAGGTATCCAGGAAGACCTCACGGTCCGGGCAGGGTATCTTCCCGGGGATGGGGATCA
11965.18e-15ATATTAAGAGCCCGCGACACGAAAATTTCCTGTCCTGGCAACCTCCCCCGGTGACATC

Motif WKGTDTHTCCCAGGKASCCMT

StartP-valueSite
7131.05e-12ACCCCTCCCTTGGTGTATCCCAGGTAGCCATAATTTGTCAG
2881.28e-11GACCCCTCCCTTGTGTATCCCAGGTAGCCATAATTTGTCAG
6883.71e-11ATGGGGGATCAGGTTTCTCCCAGGGACCCCTCCCTTGGTGT
2643.71e-11GATGGGGATCAGGTTTCTCCCAGGGACCCCTCCCTTGTGTA
9539.80e-10TCTTTATATCTTGAATTTCAGAGGTACACATGAATATTATC

Motif CWKTYTCKRRCTYTTYTTSTYTTCYRGT

StartP-valueSite
8722.70e-14ATTTTCTTCCCAGTTTCGAACTTTTCTTGTTTTCTGGTGCTTTCTCTG
4482.70e-14ATTTTCTTCCCAGTTTCGAACTTTTCTTGTTTTCTGGTTGCTTTCTCT
9015.96e-13TTTTCTGGTGCTTTCTCTGGCTCTTTTTCTCTTCCAGTACTTCTACGA
4785.96e-13TTTCTGGTTGCTTTCTCTGGCTCTTTTTCTCTTCCAGTACTTCTACGA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
aORI10010327 100.0 1243 0 0 1 1243 1 1243 0.0 2296
aORI10010327 96.42 419 1 13 591 1003 174 584 0.0 678
aORI10010327 96.42 419 1 13 174 584 591 1003 0.0 678
aORI10010328 97.706 654 6 8 591 1243 174 819 0.0 1116
aORI10010328 97.778 585 6 7 1 584 1 579 0.0 1002
aORI10010190 93.528 479 31 0 765 1243 1 479 0.0 713
aORI10010190 90.612 245 17 6 340 584 1 239 0.0 320
aORI10010039 75.938 320 55 17 934 1243 606 913 7.29e-36 145