DoriC

RefSeq

NC_018227.2

DoriC accession number

aORI10010190

OriC length

479 nt

OriC AT content

0.5428

The location of oriC region

2789722..427 nt

Browse in NCBI

OriC map

OriC sequences

CCTCTGTACACAGCCGGTAAATCCAGTGTAAATTCCTGATCAGGTCATCCAACCTGGTTTGTAATTCAATAAACCGGGTTTATTGTCATCTTTTTGCATTTCCTTCCCAGTTTCGAACTTTTCTTCTTTTCTGATGCTTTCTCTGGCTCTTCTTATTTTCCAGTACTTTTACGATATATCTTTATATCTTGAATTGTAGAGGTACACATGACTATTATCATCACTTTTGCATGCATGAGACAGCCCTGTATCATCATCACCCTCCACTGGAAACAAAGGGGTCGGGGCGTCACCGGGATCACCGCTCTGCTATTCTCCACCATTTCATCATCACTCCAGGGTCTTCACGGGTCTTCTGCCGGCGATCACCCTGCTCTAAGTTCCACTGGAAACGAAGGGGTTATCTGCGACAAGAACGATCATATTAAGAGCCCGCGACACGAAAATTTCCTGTCCTGGCAACCTCCCCCGGTGACATC

ORB AT-rich region

The information of repeat sequences

Motif TKGAAWHRAAGGGGT

Start	P-value		Site
387	1.11e-10	TAAGTTCCAC	TGGAAACGAAGGGGT	TATCTGCGAC
268	2.51e-10	CACCCTCCAC	TGGAAACAAAGGGGT	CGGGGCGTCA
189	1.23e-07	TCTTTATATC	TTGAATTGTAGAGGT	ACACATGACT
65	2.42e-07	TGGTTTGTAA	TTCAATAAACCGGGT	TTATTGTCAT

Motif GCGACAMGAA

Start	P-value		Site
407	2.81e-07	GGGGTTATCT	GCGACAAGAA	CGATCATATT
435	6.20e-07	TTAAGAGCCC	GCGACACGAA	AATTTCCTGT

Motif GGGTCTTC

Start	P-value		Site
349	1.42e-05	GGGTCTTCAC	GGGTCTTC	TGCCGGCGAT
339	1.42e-05	CATCACTCCA	GGGTCTTC	ACGGGTCTTC
284	3.55e-05	CAAAGGGGTC	GGGGCGTC	ACCGGGATCA
145	5.70e-05	TGCTTTCTCT	GGCTCTTC	TTATTTTCCA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010190	100.0	479	0	0	1	479	1	479	0.0	885
aORI10010328	93.528	479	31	0	1	479	341	819	0.0	713
aORI10010327	93.528	479	31	0	1	479	765	1243	0.0	713
aORI10010327	90.612	245	17	6	1	239	340	584	0.0	320
aORI10010039	76.415	318	57	14	170	479	606	913	1.27e-39	156