DoriC

RefSeq

NZ_LN831302.1

DoriC accession number

aORI10010325

OriC length

1158 nt

OriC AT content

0.6131

The location of oriC region

1905..3062 nt

Browse in NCBI

OriC map

OriC sequences

CCTTGGCCTCCATACGCACCCCGCGCCTTGTATGCTTGACGCAGGATACGGACGGTTGCTACGGTAGAGCGGCCGAGCGGACTTAAACCTACGTCAGACGTATCGGCACGGAGATAGGTATTCGGACGGTCAGGTATGGAGTGATTCGGATGGGGTGGGACTGACAGAACAGAGCAGAGCGGAAGGAAACGAGGTGGGACGGAAGGGGTGGAACGGAATAGAGCGGAAGGAAACGGGACGAAACGGAACGGTTCGACGCGAAGCGGGCGGGTGCGTGAATGTGGGTTGACGAGAGCGCGTCAGCGGAGCCGGATGGAGACCGGTCGGGACTAGGCCGGACGGACCGGAACTGCGTGGGGAGTGCTAGCAGGAGCAGGCCGGAAGGCCCCCACCCCTTCGTTTCGAGTGGAAACGAGAGACGGAACGGGACCGTCGCCACAGAACAGGAGTTTCGACCGAGAACACGACTAGTCCTAGACCAGACCACGCCCACAAAATCCGGTTTAGGCTGTATTGCGGTTACTGTTTCTGAGTGTATTACTTAGTCTTTTCTCTCTCCTAGAACCAATCGTGTACTGGACCCCCTCCCCCGGTCTGTTTCGCCGTTCCACTCGAAACGAAGGGGTGGGGGGCGGACCCCTGTCCCCCACTCCGACCCCCCTGTTTCCGATGGAACCCGCAATACGCCGGGTCGAGACCACCCACTCCTCGGAACGTCTACCCCGAGCTGACTCTCACCACCGTTTCACCGCGCAGTCGAAACGCTCCCGCGGGACCCCTTCTCGCCGCTCACCTCGCTCGACAGAGATATTCTCTAGCACGCTCCGGTCGCGGTTCCGGAGCGAACGCCGGCTGCTCCTCCAGTAGTGCTACACTCCTCTCTTCGCCCACTCTCGCTCGTCTCTCCCCGTCTCGGGCGCACTTGCGCCGTCTCGCTCGCTGCCGCTCGTCTCCGACATCCCCCTGGCTTCGAGTCCGATTGTCAGTCACCGACCTGACCCCATCGAAACTTATTAGTCCCTCTCGTTTCCATTAGTTCATCTGCATCAACTGGAGCGCCCGGTCACTGAACCGCCTCGAACGCCCCGTTCGCGTCGGTCTGTGGCTTCCTCTCCGTGCGCGGCGCTCTCCACACGAAACGAAGGGGCTCCGCAAACT

ORB AT-rich region

The information of repeat sequences

Motif GGANTAGRVCGGAMGGAHABGRRVTGVDWCGGAAGGGBTVG

Start	P-value		Site
171	5.43e-19	CTGACAGAAC	AGAGCAGAGCGGAAGGAAACGAGGTGGGACGGAAGGGGTGG	AACGGAATAG
215	2.26e-18	GGGGTGGAAC	GGAATAGAGCGGAAGGAAACGGGACGAAACGGAACGGTTCG	ACGCGAAGCG
118	3.16e-16	ACGGAGATAG	GTATTCGGACGGTCAGGTATGGAGTGATTCGGATGGGGTGG	GACTGACAGA
327	1.81e-15	AGACCGGTCG	GGACTAGGCCGGACGGACCGGAACTGCGTGGGGAGTGCTAG	CAGGAGCAGG

Motif ASWCGAAACG

Start	P-value		Site
755	7.09e-07	TTCACCGCGC	AGTCGAAACG	CTCCCGCGGG
610	2.21e-06	TCGCCGTTCC	ACTCGAAACG	AAGGGGTGGG
1132	3.01e-06	GGCGCTCTCC	ACACGAAACG	AAGGGGCTCC
405	3.65e-06	CTTCGTTTCG	AGTGGAAACG	AGAGACGGAA
417	9.04e-06	TGGAAACGAG	AGACGGAACG	GGACCGTCGC

Motif ATTASTYMVTCT

Start	P-value		Site
1032	1.12e-08	TCTCGTTTCC	ATTAGTTCATCT	GCATCAACTG
537	1.75e-07	TTCTGAGTGT	ATTACTTAGTCT	TTTCTCTCTC
1013	2.46e-07	ATCGAAACTT	ATTAGTCCCTCT	CGTTTCCATT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010325	100.0	1158	0	0	1	1158	1	1158	0.0	2139
aORI10010248	86.207	58	6	2	576	632	656	712	7.03e-11	62
aORI10010137	100.0	29	0	0	604	632	441	469	1.18e-08	55
aORI10010009	100.0	29	0	0	604	632	417	445	1.18e-08	55