DoriC

RefSeq

NZ_CP011070.1

DoriC accession number

aORI10010296

OriC length

487 nt

OriC AT content

0.2998

The location of oriC region

63819..64305 nt

Browse in NCBI

OriC map

OriC sequences

ACTCACACACCTTCATTTCCAATGTATCTATCATATCCATATCTAAATTAAGAGAGTATAGAATACAACAGTAATTGTAGTTTAGTTTGTAATTAATTATTTTTAGTTAGTTTTAGATTTTCTTAAAAAAAATAATTAAAAAAAGATAGAGTGGAAATATTGGTGTGTGGGTTTAGTCCAAAAAAATTAAAATTAACATTTTTGTTATTGGTATGTTAAGAAAATCCTAAAAAACCTCATTTTACCCCCTTTATTTCCATTCCAGGCGTTAAGGTGGATGTTAACACTGTGAATATCATCAAAATACCCCTTTATTTCCACTCCAGGCATGAAAATACCCTAAAAATTAACCATTTTGATTGTGTGGTTGTTAATAACAAAATTATGGCTAGGCGTGGCCTAGGCAGTCAACGTTAACAAACTAATTAGTTAACAAAGATTCTGGGATCCATTGAACTGTTAACTACTGATCCATTAGATCTCTAAG

ORB AT-rich region

The information of repeat sequences

Motif CMCCTTTATTTCCAHTSYAKSYAT

Start	P-value		Site
307	1.09e-15	CATCAAAATA	CCCCTTTATTTCCACTCCAGGCAT	GAAAATACCC
246	3.41e-15	CTCATTTTAC	CCCCTTTATTTCCATTCCAGGCGT	TAAGGTGGAT
8	3.42e-12	ACTCACA	CACCTTCATTTCCAATGTATCTAT	CATATCCATA

Motif GWGTGG

Start	P-value		Site
393	2.49e-05	TTATGGCTAG	GCGTGG	CCTAGGCAGT
362	8.02e-05	CATTTTGATT	GTGTGG	TTGTTAATAA
165	8.02e-05	AAATATTGGT	GTGTGG	GTTTAGTCCA
149	1.37e-04	AAAAAAGATA	GAGTGG	AAATATTGGT

Motif GTTAAC

Start	P-value		Site
459	3.38e-04	CCATTGAACT	GTTAAC	TACTGATCCA
429	3.38e-04	AAACTAATTA	GTTAAC	AAAGATTCTG
413	3.38e-04	GGCAGTCAAC	GTTAAC	AAACTAATTA
280	3.38e-04	TAAGGTGGAT	GTTAAC	ACTGTGAATA
215	6.58e-04	TTATTGGTAT	GTTAAG	AAAATCCTAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
aORI10010296	100.0	487	0	0	1	487	1	487	900
aORI10010241	84.881	463	49	19	38	487	455	1	448
aORI10010240	79.757	494	71	17	1	485	500	27	331
aORI10010053	79.637	496	72	22	1	486	478	2	329