DoriC

RefSeq

NC_018656.1

DoriC accession number

aORI10010241

OriC length

494 nt

OriC AT content

0.2814

The location of oriC region

1624045..1624538 nt

Browse in NCBI

OriC map

OriC sequences

CTTTGAGATCTAAAGGATCGAATGTTAACAGTTCAAATGATCCGCGAATATTTGTTAACTAAGTAGTTTGTTAACATTGACTGCCTAGCCTACGCCTAACCTATTTTTTGTTATTAACAACACATTATTAAAAAATCTATTAAATTAAGATATTTTCGTGACTGGAGTGGAAATAAAGGGGTTGATTTCATGATATTCACAGTGTTAACATCTATCTTAACGCCTGGAATGGAAATAAAGGGGTTAAAATGACCTTTTCAGGGTGTTTTTTAACATAAACTTAACAAAAATGTTAACTTATTTCTAATTTCATACTAAACCCACACACCAATATTTCCACTCTATCTTTTTCTTTAATTTTTTTTTAATAGGAAATCTAAAACTAACTAAAAATAATTAATTACAAACTAAACTACAATTATTATTCTATTCTATACTCTCTTAATTTAGATATGATTGTGTTAATGTTGAGAGGAAACAAAGGTGTGTGAGTG

ORB AT-rich region

The information of repeat sequences

Motif STKGARWGGAAATAAAGGKGT

Start	P-value		Site
162	4.57e-14	ATTTTCGTGA	CTGGAGTGGAAATAAAGGGGT	TGATTTCATG
224	3.59e-13	ATCTTAACGC	CTGGAATGGAAATAAAGGGGT	TAAAATGACC
467	4.47e-12	TTGTGTTAAT	GTTGAGAGGAAACAAAGGTGT	GTGAGTG

Motif TGTTAAC

Start	P-value		Site
291	1.21e-04	TTAACAAAAA	TGTTAAC	TTATTTCTAA
203	1.21e-04	ATATTCACAG	TGTTAAC	ATCTATCTTA
69	1.21e-04	CTAAGTAGTT	TGTTAAC	ATTGACTGCC
53	1.21e-04	CGCGAATATT	TGTTAAC	TAAGTAGTTT
23	1.21e-04	AAGGATCGAA	TGTTAAC	AGTTCAAATG

Motif GCCTARCC

Start	P-value		Site
83	1.09e-06	AACATTGACT	GCCTAGCC	TACGCCTAAC
94	3.86e-06	CCTAGCCTAC	GCCTAACC	TATTTTTTGT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
aORI10010241	100.0	494	0	0	1	494	1	494	913
aORI10010296	84.848	462	51	18	1	455	487	38	448
aORI10010053	80.894	492	70	17	7	493	6	478	366
aORI10010240	80.122	493	70	18	7	493	30	500	342