DoriC

RefSeq

NC_018655.1

DoriC accession number

aORI10010240

OriC length

500 nt

OriC AT content

0.312

The location of oriC region

1596039..1596538 nt

Browse in NCBI

OriC map

OriC sequences

ATCTATACGAATACGTTTTTTGGCCATAGGATCTATTCGATCTGATGTTAACAGTTCAAATGATCCGCGAATTTTTGTTAACTAAGTGGTTTGTTAACGTTGACTGTGTAAGCCACGCCTAGTCATTATTTTGTTATTAACAACTGATTATAATTAATTCCCCCAAACCATAGATTAATCACGCCTGGAGTGGAAATAAAGGGGTTATTTTTACCATATTCACACTGTTAACGTCAATCTTAACGCCTGGAGTGGAAATAAAGGGGTCAAAATGGGGTTTTTTTGTAATTCCTTAACAAGAAATTAACAGTTTGTTAACACCAAAACCCACACACCATTATTTCCACTCTTCTTTTTTTAATTATTTTTTTTTGGGGAAAAAACAAAAACAAACTAAAAATAATTAATTACAAACTAAACTACAATTACTATTCTATTCTTTACTCTCTTAATTTAGATATGGATATGATGATATTGATAGGAAACAAAGGTGTGTGAGT

ORB AT-rich region

The information of repeat sequences

Motif SRYMTKGAKWGGAAATAAAGGKGT

Start	P-value		Site
244	3.08e-16	TCAATCTTAA	CGCCTGGAGTGGAAATAAAGGGGT	CAAAATGGGG
182	3.08e-16	AGATTAATCA	CGCCTGGAGTGGAAATAAAGGGGT	TATTTTTACC
471	3.96e-12	TGGATATGAT	GATATTGATAGGAAACAAAGGTGT	GTGAGT

Motif TGTTAAC

Start	P-value		Site
313	1.20e-04	ATTAACAGTT	TGTTAAC	ACCAAAACCC
226	1.20e-04	ATATTCACAC	TGTTAAC	GTCAATCTTA
92	1.20e-04	CTAAGTGGTT	TGTTAAC	GTTGACTGTG
76	1.20e-04	CGCGAATTTT	TGTTAAC	TAAGTGGTTT
46	1.20e-04	TTCGATCTGA	TGTTAAC	AGTTCAAATG

Motif CCCMCAMACCA

Start	P-value		Site
327	8.76e-08	AACACCAAAA	CCCACACACCA	TTATTTCCAC
160	8.76e-08	ATAATTAATT	CCCCCAAACCA	TAGATTAATC

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
aORI10010240	100.0	500	0	0	1	500	1	500	924
aORI10010053	86.515	482	51	11	27	500	3	478	518
aORI10010241	80.242	496	64	23	30	500	7	493	342
aORI10010296	79.757	494	71	17	27	500	485	1	331