DoriC

RefSeq

NC_017162.1

Accession number

NC_017162.1

DoriC accession number

ORI96010013

OriC length

670 nt

OriC AT content

0.734328

The location of oriC region

17714..18383 nt

Browse in NCBI

OriC map

OriC sequences

dnaAGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTTAAATTTAAAACTGTGAAATCCACAAGAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGCTGATTCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAACCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGTATAACTTTTAAATAAGAAAAATAGGCTAAATATAAAGAGAAGATAAAAAATTAAAAATTTGACTTAAATACAAAACTTTCACGGTTTTTCATTGACAGCGTAAACATTGCACAATAAAATCGCGGACCTTTATAGAAAGATCATTTTTGGGAGTTTCGATrpmH

dnaaGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTTAAATTTAAAACTGTGAAATCCACAAGAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGCTGATTCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAACCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGTATAACTTTTAAATAAGAAAAATAGGCTAAATATAAAGAGAAGATAAAAAATTAAAAATTTGACTTAAATACAAAACTTTCACGGTTTTTCATTGACAGCGTAAACATTGCACAATAAAATCGCGGACCTTTATAGAAAGATCATTTTTGGGAGTTTCGATrpmh

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TTGTGDATAAMT

Start	P-value		Site
371	6.88e-08	CTGATTCAAA	TTGTGGATAACT	AAAAAATATG
167	3.23e-07	TCAAAATCAA	TTGTGAATAACT	TTTTGCACAT
505	7.00e-07	AACAATTACT	TTGTGTATAACT	TTTAAATAAG
190	8.83e-07	TTTGCACATC	CTGTGGATAAAT	TATCACATAA
139	1.60e-06	AAGAAATCTC	TTGTGAATAAAT	TTAAATTCAA

Motif TSCWSAWKAAAAKBSSDSACY

Start	P-value		Site
53	9.20e-12	GATTAACCCT	TCCTGATGAGAAGGGGTCGCC	ATTCTACCCA
295	1.78e-10	AACTGTGAAA	TCCACAAGAAAAGTCCACACT	AATAAGAATA
618	2.07e-10	GCGTAAACAT	TGCACAATAAAATCGCGGACC	TTTATAGAAA

Motif TGWCWGCG

Start	P-value		Site
13	1.36e-06	GTATCCCCTA	TGTCTGCG	TTTTAAATTC
603	6.90e-06	GGTTTTTCAT	TGACAGCG	TAAACATTGC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96010013	100.0	670	0	0	1	670	1	670	1238
ORI92710458	99.255	671	3	2	1	670	670	1	1210
ORI96010325	99.106	671	4	2	1	670	1	670	1205
ORI92310381	99.106	671	4	2	1	670	670	1	1205
ORI96010208	99.106	671	3	3	1	670	669	1	1203
ORI96010015	99.106	671	3	3	1	670	1	669	1203
ORI92710456	98.957	671	3	4	1	670	1	668	1197
ORI92310379	98.214	672	9	3	1	670	671	1	1171
ORI92510414	99.028	617	4	2	1	616	1	616	1105
ORI96010089	99.028	617	3	3	1	616	1	615	1103
ORI95010947	87.262	683	72	9	1	670	681	1	765
ORI93010694	86.735	686	70	14	1	670	681	1	743
ORI10010111	76.862	631	108	31	57	669	612	2	322