DoriC

RefSeq

NC_010611.1

Accession number

NC_010611.1

DoriC accession number

ORI92510414

OriC length

616 nt

OriC AT content

0.74026

The location of oriC region

6768..7383 nt

Browse in NCBI

OriC map

OriC sequences

dnaAGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTAAATTTAAAACTGTGAAATCCACAAAAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGGCTGATCCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAACCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGTATAACTTTTAAATAAGAAAAATAGGCTAAATATAAAGAGAAGATAAAAAGTTAAAAATTTGACTTAAATACAAAACTTTCACTGTTTTTCATTGACAGCGTAAACArpmH

dnaaGTGTATCCCCTATGTCTGCGTTTTAAATTCAAATCATTTAAAGATTAACCCTTCCTGATGAGAAGGGGTCGCCATTCTACCCAAGTTATCCACATCTGTCATGACGATTTCGTTTGATTTTGCCTAAAAAGAAATCTCTTGTGAATAAATTTAAATTCAAAATCAATTGTGAATAACTTTTTGCACATCCTGTGGATAAATTATCACATAAACTTATCCACAATCCATAAAGACAATAAAAACAGAGTTATCAACAGTTCAAATATATGTTTTTTAAATTTAAAACTGTGAAATCCACAAAAAAAGTCCACACTAATAAGAATAAATTTAAATTTTAAAATTTGAATTTATTTAATAGGGCTGATCCAAATTGTGGATAACTAAAAAATATGAATTTAAATTCAAATATACCAAATCAAAACCAACTTCACATCAAGGTTTGTTGATAAGTATGTAAATAAGAAGTGTATATCTTAAAAGTCTTAATAAAAATAAACAATTACTTTGTGTATAACTTTTAAATAAGAAAAATAGGCTAAATATAAAGAGAAGATAAAAAGTTAAAAATTTGACTTAAATACAAAACTTTCACTGTTTTTCATTGACAGCGTAAACArpmh

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TGTGDATAAMT

Start	P-value		Site
372	1.86e-07	TGATCCAAAT	TGTGGATAACT	AAAAAATATG
168	8.42e-07	CAAAATCAAT	TGTGAATAACT	TTTTGCACAT
191	1.38e-06	TTGCACATCC	TGTGGATAAAT	TATCACATAA
506	1.89e-06	ACAATTACTT	TGTGTATAACT	TTTAAATAAG
140	3.78e-06	AGAAATCTCT	TGTGAATAAAT	TTAAATTCAA

Motif TCCACA

Start	P-value		Site
307	1.67e-04	ACAAAAAAAG	TCCACA	CTAATAAGAA
294	1.67e-04	AACTGTGAAA	TCCACA	AAAAAAGTCC
217	1.67e-04	CATAAACTTA	TCCACA	ATCCATAAAG
89	1.67e-04	ACCCAAGTTA	TCCACA	TCTGTCATGA
182	3.03e-04	AATAACTTTT	TGCACA	TCCTGTGGAT

Motif GGGSTS

Start	P-value		Site
358	2.55e-05	TTATTTAATA	GGGCTG	ATCCAAATTG
65	2.55e-05	CTGATGAGAA	GGGGTC	GCCATTCTAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI92510414	100.0	616	0	0	1	616	1	616	1138
ORI92710458	99.513	616	3	0	1	616	670	55	1122
ORI96010325	99.351	616	4	0	1	616	1	616	1116
ORI92310381	99.351	616	4	0	1	616	670	55	1116
ORI96010208	99.351	616	3	1	1	616	669	55	1114
ORI96010089	99.351	616	3	1	1	616	1	615	1114
ORI96010015	99.351	616	3	1	1	616	1	615	1114
ORI92710456	99.188	616	3	2	1	616	1	614	1109
ORI96010013	99.028	617	4	2	1	616	1	616	1105
ORI92310379	98.379	617	9	1	1	616	671	55	1083
ORI95010947	86.328	629	71	8	1	616	681	55	671
ORI93010694	85.737	631	71	12	1	616	681	55	649
ORI10010111	82.073	357	52	12	57	407	612	262	294