DoriC

RefSeq

NZ_CP023496

DoriC accession number

pORI00001008

OriC length

673 nt

OriC AT content

0.74

The location of oriC region

26619..27291 nt

Browse in NCBI

OriC map

OriC sequences

GTATAAATTTTGATATTTTTTCTAAGACGTTAGCGAAAAAGCTAGCGTTTTTTTATTGAAAAGTGCTAAAAAATATTTGGGGACATTTTGGGTACAAAACAAATTTTAGGCACCTAATGTAAAACGTTGTAATCCTTGAAATGTCTGGCTTCGCCAGACCCACCTTTTTAAAAGGTGGCAAATTCCCCTTATGCTCTTAATTTTTATTTTGGACAAAATCAAGATTTCGGTGTTTTTTTATAGAAATTTATCCTTGAAAGAATTAAAAATCGTCATTGGCTTTGATTAAAATTTGTGATGTAAAATCAAAATATATTTATTTGCCTCTCATTTGCATTTTAAGAGCTGACAGAAATTTCTAGGTAATTAATATACTATAAATTGGATTTAATGCTTTGAAATCCGATTTAAAATTGAAATTAAGATCATTTCATTATTACGAGCAATTTACTTTCAGTATGAAAGCTTTTTGGGTGTCCAATTTGTCTATAGGCACTACATAAAAAGAAACCATAATTAAACAGAGTTTAACTATGATAGTCATGAAAAAAATAGTTGGTGTTTTAAATTTTGAAGTTAATAAAGCAATAACTTCGGATGAAATTTTTATAATATTTATGTAATATTTATGTAATAATTATAGATCAATTATAAATAATTAGAAGGATTTTTT

AT-rich region

The information of repeat sequences

Motif SYAAHTTSBCYWTABSCWC

Start	P-value		Site
145	8.98e-12	CTTGAAATGT	CTGGCTTCGCCAGACCCAC	CTTTTTAAAA
178	6.65e-10	TTAAAAGGTG	GCAAATTCCCCTTATGCTC	TTAATTTTTA
478	1.25e-09	TTTTGGGTGT	CCAATTTGTCTATAGGCAC	TACATAAAAA

Motif AAGASSTKASMGAAAWWKCTAGS

Start	P-value		Site
24	2.73e-13	TATTTTTTCT	AAGACGTTAGCGAAAAAGCTAGC	GTTTTTTTAT
341	2.14e-12	TTTGCATTTT	AAGAGCTGACAGAAATTTCTAGG	TAATTAATAT

Motif GGGKAC

Start	P-value		Site
79	1.97e-05	AAAAATATTT	GGGGAC	ATTTTGGGTA
90	7.01e-05	GGGACATTTT	GGGTAC	AAAACAAATT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00001008	100.0	673	0	0	1	673	1	673	1243
pORI00001005	100.0	673	0	0	1	673	673	1	1243
pORI00000323	83.333	240	27	11	73	306	1172	940	209