DoriC

RefSeq

NZ_CP023496

DoriC accession number

pORI00001005

OriC length

673 nt

OriC AT content

0.74

The location of oriC region

8894..9566 nt

Browse in NCBI

OriC map

OriC sequences

AAAAAATCCTTCTAATTATTTATAATTGATCTATAATTATTACATAAATATTACATAAATATTATAAAAATTTCATCCGAAGTTATTGCTTTATTAACTTCAAAATTTAAAACACCAACTATTTTTTTCATGACTATCATAGTTAAACTCTGTTTAATTATGGTTTCTTTTTATGTAGTGCCTATAGACAAATTGGACACCCAAAAAGCTTTCATACTGAAAGTAAATTGCTCGTAATAATGAAATGATCTTAATTTCAATTTTAAATCGGATTTCAAAGCATTAAATCCAATTTATAGTATATTAATTACCTAGAAATTTCTGTCAGCTCTTAAAATGCAAATGAGAGGCAAATAAATATATTTTGATTTTACATCACAAATTTTAATCAAAGCCAATGACGATTTTTAATTCTTTCAAGGATAAATTTCTATAAAAAAACACCGAAATCTTGATTTTGTCCAAAATAAAAATTAAGAGCATAAGGGGAATTTGCCACCTTTTAAAAAGGTGGGTCTGGCGAAGCCAGACATTTCAAGGATTACAACGTTTTACATTAGGTGCCTAAAATTTGTTTTGTACCCAAAATGTCCCCAAATATTTTTTAGCACTTTTCAATAAAAAAACGCTAGCTTTTTCGCTAACGTCTTAGAAAAAATATCAAAATTTATAC

AT-rich region

The information of repeat sequences

Motif GWGSVTAWRGVSAADTTRS

Start	P-value		Site
511	8.98e-12	TTTTAAAAAG	GTGGGTCTGGCGAAGCCAG	ACATTTCAAG
478	6.65e-10	TAAAAATTAA	GAGCATAAGGGGAATTTGC	CACCTTTTAA
178	1.25e-09	TTTTTATGTA	GTGCCTATAGACAAATTGG	ACACCCAAAA

Motif SCTAGMWWTTTCKSTMASSTCTT

Start	P-value		Site
628	2.73e-13	ATAAAAAAAC	GCTAGCTTTTTCGCTAACGTCTT	AGAAAAAATA
311	2.14e-12	ATATTAATTA	CCTAGAAATTTCTGTCAGCTCTT	AAAATGCAAA

Motif GTMCCC

Start	P-value		Site
590	1.97e-05	TACCCAAAAT	GTCCCC	AAATATTTTT
579	7.01e-05	AATTTGTTTT	GTACCC	AAAATGTCCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00001008	100.0	673	0	0	1	673	673	1	1243
pORI00001005	100.0	673	0	0	1	673	1	673	1243
pORI00000323	83.333	240	27	11	368	601	940	1172	209