DoriC

RefSeq

NZ_CP007063

DoriC accession number

pORI00000657

OriC length

1193 nt

OriC AT content

0.7754

The location of oriC region

5212..95 nt

Browse in NCBI

OriC map

OriC sequences

TAAAATCACTCCTTTTTTATTTAAGTAATATATATTACTTAAATATTACTGATTAAAAATACAACAATTTCATTTATTTAATCTTAGTAATATTTATTACTTATGTATTACTATATTACTTTTATAGTATACACCTCTTTTTAAAAAAAGGCAAAATTTTTTAGAAAAAAATAGAATATAAACCTGTATCTTTTTAAAGATACAAAAGTTTTTACACTAAAATTTCTAAAATTAATTTTAAAGCATTTTAAATGATTGAGGTATAATTTATATCGTTAAAAATTATAAAATGATTTTTAAGGCTATGTCAGAGCTTTTAAATTGATTTTAAATTTATCACTGAATAAAAAAAGTTAGGTATTGTGAGAGCCCTAACTTTTTGCCATTCTGTTCAAGCAACGGATACTGTGTTGCTATGTTTCAGTTTAATTATATCACATTTATTTTTTATTTGCAATATGTTATAATTCTTGTTGCCATTTCCTCCAAAGGAGGTGAAAAATGTTCAAGAGATGGATACTACTGATAATGGTTTTAGTCTTGCTTGCTATTTTTCAATATGCAGTAAGTCTGATATGGTTTCACATTATCACAAGTTTAGTGGCTAGGTTCTTGTAAAAAATCTATGCTAAGGAGTTAGTAAAGTGTGAGAGCTTGAAAACTCCTTTTTTAGTAATATATATTACTATATTATTACTTTATGTTATTTAAGAAAATCATTGGTATTAAAAATCTTTTTATGCTATATGTATATTTATAAAAATATATATATTTTTAATATCAATATAAAATTGCTATAATTATATAAAATTTATATTTTTTTTATAAAAACTTCTTTTCAAAAAAATCACATTACTAGTAATATGATTAGTAAATATATTAGTAAATATATTAGTAGGAGGATTTTTAACACCTCTTAAAATATCATAAATTCATATTTTGAAGAGTGTTAAAAATTACAATAAGGCAACTTTTTAAGGAGTATAAGGCAACTTTTTAAGGAGTATAAGGCAACTTTTTAAGGAGTATAAGGCAACTTTTTAAGGAGTATAAGGCAACTTTTTAAGGAGTATAAGGCAACTTTTTAAAATTGATAGTTGCCTTATACTAAAAATAATGATATAATAAATCATAAGAGATGTATAAGACAACTTTTTAAGGAATATAAGACAAGAAAAGTGGAGGGATAATTT

AT-rich region

The information of repeat sequences

Motif AGDAGTATAAGGCAACTTTTTAAGGAGTATAAGGCAAC

Start	P-value		Site
1044	1.26e-23	CAACTTTTTA	AGGAGTATAAGGCAACTTTTTAAGGAGTATAAGGCAAC	TTTTTAAAAT
1000	1.26e-23	CAACTTTTTA	AGGAGTATAAGGCAACTTTTTAAGGAGTATAAGGCAAC	TTTTTAAGGA
956	1.30e-20	AGTGTTAAAA	ATTACAATAAGGCAACTTTTTAAGGAGTATAAGGCAAC	TTTTTAAGGA
1137	3.06e-19	AAATCATAAG	AGATGTATAAGACAACTTTTTAAGGAATATAAGACAAG	AAAAGTGGAG

Motif CTTKTWRMMAWTYTVTBCWAASRASK

Start	P-value		Site
470	3.40e-16	TGTTATAATT	CTTGTTGCCATTTCCTCCAAAGGAGG	TGAAAAATGT
376	1.72e-13	AGAGCCCTAA	CTTTTTGCCATTCTGTTCAAGCAACG	GATACTGTGT
612	2.01e-11	TGGCTAGGTT	CTTGTAAAAAATCTATGCTAAGGAGT	TAGTAAAGTG

Motif GTSAGAGC

Start	P-value		Site
647	1.52e-06	TTAGTAAAGT	GTGAGAGC	TTGAAAACTC
363	1.52e-06	GTTAGGTATT	GTGAGAGC	CCTAACTTTT
307	2.67e-06	TTAAGGCTAT	GTCAGAGC	TTTTAAATTG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000657	100.0	1193	0	0	1	1193	1	1193	0.0	2204
pORI00000657	100.0	83	0	0	1006	1088	962	1044	4e-38	154
pORI00000657	100.0	83	0	0	962	1044	1006	1088	4e-38	154
pORI00000657	100.0	61	0	0	1028	1088	962	1022	6.79e-26	113
pORI00000657	100.0	61	0	0	962	1022	1028	1088	6.79e-26	113
pORI00000657	100.0	39	0	0	1050	1088	962	1000	1.15e-13	73
pORI00000657	100.0	39	0	0	962	1000	1050	1088	1.15e-13	73
pORI00000657	100.0	28	0	0	18	45	45	18	1.5e-07	53
pORI00000768	87.009	331	37	5	343	669	350	678	0.0	368
pORI00000141	86.747	332	36	7	343	669	999	1327	0.0	363
pORI00000761	85.577	312	30	6	672	971	118	426	0.0	313
pORI00000761	88.991	109	7	4	1086	1193	475	579	6.74e-31	130