DoriC

RefSeq

NZ_CP013123

DoriC accession number

pORI00000761

OriC length

580 nt

OriC AT content

0.8379

The location of oriC region

5206..5785 nt

Browse in NCBI

OriC map

OriC sequences

ATTATCATCTCCTCTATCGAATATATTTAAATATTATTACATATATAGTGTTATAAACCTTTTTTATTTTATATCATTATTAATATTATGTCAAGAATAAAAATATTTTTATTTAAAAGTAATATAGACTACTGGAATATTACTATATTATTTTATAAGAATATATTGAAAATAAAAGACTTTTTTAATTATATGTATATTTATAAAAATATATACTTATTTAATATCAATATTAAATTACAATAATTTTATAAAATTTATATTTTTTTATAAAAACTTCTTTTCTAAAAAATCACATTACTAGTAATATGATTAGTAAATATATTAGTAAATAATTAGTAATATATTAGTAGGAGCATTTTTAACACTTCTTAAAATATCATAAATTCATATTTTGAAGAGTGTAAAAAATTATAATAAGACAACCAAAAGTATATAATAAGACAACCAAAAGTATATAATAAGACAACCAAATAAAAATAAGTTGCCTTTTATTGAAAATAATGATATAATAAATCATAAGAGATGTATAAGACAACTTTTTAAGGAATATAAGGCAACCAAAAGAGGAGATAATTTT

AT-rich region

The information of repeat sequences

Motif ATAAGACAACC

Start	P-value		Site
552	2.72e-08	TTTAAGGAAT	ATAAGGCAACC	AAAAGAGGAG
461	1.77e-07	AAAGTATATA	ATAAGACAACC	AAATAAAAAT
439	1.77e-07	AAAGTATATA	ATAAGACAACC	AAAAGTATAT
417	1.77e-07	AAAAATTATA	ATAAGACAACC	AAAAGTATAT
530	1.00e-06	TAAGAGATGT	ATAAGACAACT	TTTTAAGGAA

Motif KARGAG

Start	P-value		Site
567	9.33e-06	GCAACCAAAA	GAGGAG	ATAATTTT
351	5.29e-05	AATATATTAG	TAGGAG	CATTTTTAAC
397	1.04e-04	TTCATATTTT	GAAGAG	TGTAAAAAAT
520	3.44e-04	TAATAAATCA	TAAGAG	ATGTATAAGA

Motif SWTSYCYTYTATYG

Start	P-value		Site
6	1.35e-09	ATTAT	CATCTCCTCTATCG	AATATATTTA
484	2.31e-08	ATAAAAATAA	GTTGCCTTTTATTG	AAAATAATGA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000761	100.0	580	0	0	1	580	1	580	0.0	1072
pORI00000657	85.577	312	30	6	118	426	672	971	0.0	313
pORI00000657	88.991	109	7	4	475	579	1086	1193	3.22e-31	130