RefSeq NC_012006
DoriC accession number pORI00000458
OriC length 1067 nt
OriC AT content 0.4405
The location of oriC region 1976..3042 nt
Browse in NCBI
OriC map
OriC sequences
CCCCTGTTTAACAGTGACGCCCCCCCTGTTTAACAGTGACGAACCCCCCGGTTAACAGTGACGCCCCCAAACCTGCAAGGCCAGCAGGGGCGGGGGCTGGCGGGGTGCTGAAAAAATCCATCCATGATTATCTAAGAATAATCCACTAGGCGCGGTTAACAGCGCCCTAGTGGGGCGCTGTTTGCCCTTGCCCAATATGCCCGGCCAGAGGCCGGATAACTGCTCTATCCGCTGCGCTAGGCTACACACCGCCCCCACCGCTGCGCGGTAGGGGGAAAGGCGGGCTGCGCCCGCTGGTGCCATCTCGGAGGCCGCAGGAGGCCCGCAGGGGGTCACCTCAGAAAACGGAAAAAATCGTACGGTAAGCCGCTGGCATGGTCTAGCTTCTCGCAAACGATCGTTTTTGAGAGGCTTCAATGAGAATCAGATCCGCGCTAGTGCTGGTATGGCATGTTGCTTTCTCGAAAACCACTCTCATATTGCACGGCTGAAACAGCCGAGTTTCGAGAACCACGAAAATGCTGTTTCTAGGGGTTGGCAGCTTGCGCAAAGCCGCGCAGTTGCTGGGTATCGGATCTCTTAACGTGCTTTAATTTCCGAATTCTGAAGCGACCCCTAGAAGAACAGCAAGGCCGCCAATGCCTGACGATGCGTGGAGACCGAAACCTTGCGCTCGTTCGCCAGCCAGGACAGAAATGCCTCGACTTCGCTGCTGCCCAAGGTTGCCGGGTGACGCACACCGTGGAAACGGATGAAGGCACGAACCCAGTGGACATAAGCCTGTTCGGTTCGTAAACTGTAATGCAAGTAGCGTATGCGCTCACGCAACTGGTCCAGAACCTTGACCGAACGCAGCGGTGGTAACGGCGCAGTGGCGGTTTTCATGGCTTGTTATGACTGTTTTTTTGGGGTACAGTCTATGCCTCGGGCATCCAAGCAGCAAGCGCGTTACGCCGTGGGTCGATGTTTGATGTTATGGAGCAGCAACGATGTTACGCAGCAGGGCAGTCGCCCTAAAACAAAGTTAGACGGGCGTACAAAGATAATTTCCATCTCAAGGGATCACC
CCCCTGTTTAACAGTGACGCCCCCCCTGTTTAACAGTGACGAACCCCCCGGTTAACAGTGACGCCCCCAAACCTGCAAGGCCAGCAGGGGCGGGGGCTGGCGGGGTGCTGAAAAAATCCATCCATGATTATCTAAGAATAATCCACTAGGCGCGGTTAACAGCGCCCTAGTGGGGCGCTGTTTGCCCTTGCCCAATATGCCCGGCCAGAGGCCGGATAACTGCTCTATCCGCTGCGCTAGGCTACACACCGCCCCCACCGCTGCGCGGTAGGGGGAAAGGCGGGCTGCGCCCGCTGGTGCCATCTCGGAGGCCGCAGGAGGCCCGCAGGGGGTCACCTCAGAAAACGGAAAAAATCGTACGGTAAGCCGCTGGCATGGTCTAGCTTCTCGCAAACGATCGTTTTTGAGAGGCTTCAATGAGAATCAGATCCGCGCTAGTGCTGGTATGGCATGTTGCTTTCTCGAAAACCACTCTCATATTGCACGGCTGAAACAGCCGAGTTTCGAGAACCACGAAAATGCTGTTTCTAGGGGTTGGCAGCTTGCGCAAAGCCGCGCAGTTGCTGGGTATCGGATCTCTTAACGTGCTTTAATTTCCGAATTCTGAAGCGACCCCTAGAAGAACAGCAAGGCCGCCAATGCCTGACGATGCGTGGAGACCGAAACCTTGCGCTCGTTCGCCAGCCAGGACAGAAATGCCTCGACTTCGCTGCTGCCCAAGGTTGCCGGGTGACGCACACCGTGGAAACGGATGAAGGCACGAACCCAGTGGACATAAGCCTGTTCGGTTCGTAAACTGTAATGCAAGTAGCGTATGCGCTCACGCAACTGGTCCAGAACCTTGACCGAACGCAGCGGTGGTAACGGCGCAGTGGCGGTTTTCATGGCTTGTTATGACTGTTTTTTTGGGGTACAGTCTATGCCTCGGGCATCCAAGCAGCAAGCGCGTTACGCCGTGGGTCGATGTTTGATGTTATGGAGCAGCAACGATGTTACGCAGCAGGGCAGTCGCCCTAAAACAAAGTTAGACGGGCGTACAAAGATAATTTCCATCTCAAGGGATCACC
AT-rich region
The information of repeat sequences

Motif CCCCHGDTTAACAGTGACGCC

StartP-valueSite
12.38e-13.CCCCTGTTTAACAGTGACGCCCCCCCTGTTT
451.04e-11AGTGACGAACCCCCCGGTTAACAGTGACGCCCCCAAACCTG
231.04e-11AGTGACGCCCCCCCTGTTTAACAGTGACGAACCCCCCGGTT
6148.57e-10CTGAAGCGACCCCTAGAAGAACAGCAAGGCCGCCAATGCCT

Motif ADCCGCGCARDTGCTGKTTHBVBGDBTTGBTA

StartP-valueSite
5098.05e-14GAGTTTCGAGAACCACGAAAATGCTGTTTCTAGGGGTTGGCAGCTTGCGCAA
8639.91e-14CAGCGGTGGTAACGGCGCAGTGGCGGTTTTCATGGCTTGTTATGACTGTTTT
5516.69e-13GCTTGCGCAAAGCCGCGCAGTTGCTGGGTATCGGATCTCTTAACGTGCTTTA
4284.60e-12TGAGAATCAGATCCGCGCTAGTGCTGGTATGGCATGTTGCTTTCTCGAAAAC

Motif TAATTTCC

StartP-valueSite
10447.48e-06CGTACAAAGATAATTTCCATCTCAAGGG
5917.48e-06TAACGTGCTTTAATTTCCGAATTCTGAA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000458 100.0 1067 0 0 1 1067 1 1067 0.0 1971
pORI00000144 88.889 288 30 2 9 295 34 320 0.0 353
pORI00000140 93.305 239 14 2 58 295 192 429 0.0 351
pORI00000362 87.5 288 34 2 9 295 56 342 0.0 331