DoriC

RefSeq

NC_002524

DoriC accession number

pORI00000362

OriC length

532 nt

OriC AT content

0.4774

The location of oriC region

4629..5160 nt

Browse in NCBI

OriC map

OriC sequences

CCCCCTGTTTAACAGTCACGCCCCTCCCCCGGCGCAACTGTCACGCCCCCCGGCGTAACTGTCACGCCCCCCCGGCGTAACTGTCACGAACCCCCGGCGTAACTGTCACGCCCCTAAACCTGCAAACCCAGGAAGGAGGGGAGCTGGTGGGGTGTTGGAAAAATCCATCCATGATTATCCAAGAATAATCCACTAGGCGCGGTTAACAGCGCCCTAGTGGGGCGCTGTTTGCCCTTGCTTAAAATGCCGGCCAGAGGCCGGATAATTGCTCTATCCGCTGCGCTAGGCTGCACACGCCCCCCCACCGCTGCGCGGCAGGGGGAAAGGCGGGCAAAGCCCGCTAAACCCCACACCAAATTCTGCGGGAATACGCTGGAGCGATTTTAGCCGCTTTAGCGGCCTTTTACCATTATCAAGAGTAAACTATTAAAAATCCATTAAAATCAATACTTTCACTTTGAGAACATGTATTTAAAGTAAATAACAATTAAAGCCTGTATCTTAGTTATCACTTGAGATACAGGCTTTTTAT

AT-rich region

The information of repeat sequences

Motif CCCCCGGCGTAACTGTCACGC

Start	P-value		Site
91	5.69e-13	CTGTCACGAA	CCCCCGGCGTAACTGTCACGC	CCCTAAACCT
47	5.69e-13	ACTGTCACGC	CCCCCGGCGTAACTGTCACGC	CCCCCCGGCG
69	1.48e-12	CTGTCACGCC	CCCCCGGCGTAACTGTCACGA	ACCCCCGGCG
26	4.02e-12	TCACGCCCCT	CCCCCGGCGCAACTGTCACGC	CCCCCGGCGT
1	2.68e-11	.	CCCCCTGTTTAACAGTCACGC	CCCTCCCCCG

Motif TVTTWRHHVTHVMTTAAAATNMADGCYTK

Start	P-value		Site
425	5.60e-13	AAGAGTAAAC	TATTAAAAATCCATTAAAATCAATACTTT	CACTTTGAGA
500	4.44e-12	AAAGCCTGTA	TCTTAGTTATCACTTGAGATACAGGCTTT	TTAT
469	6.57e-12	TGAGAACATG	TATTTAAAGTAAATAACAATTAAAGCCTG	TATCTTAGTT
226	6.06e-11	AGTGGGGCGC	TGTTTGCCCTTGCTTAAAATGCCGGCCAG	AGGCCGGATA

Motif GCTGGWGSGRTKTT

Start	P-value		Site
143	2.06e-09	AAGGAGGGGA	GCTGGTGGGGTGTT	GGAAAAATCC
372	2.02e-08	GCGGGAATAC	GCTGGAGCGATTTT	AGCCGCTTTA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000362	100.0	532	0	0	1	532	1	532	983
pORI00000144	96.257	374	9	4	36	405	11	383	608
pORI00000140	91.419	303	23	3	104	405	191	491	412
pORI00000458	87.5	288	34	2	56	342	9	295	331