DoriC

RefSeq

NC_008460

DoriC accession number

pORI00000019

OriC length

362 nt

OriC AT content

0.5442

The location of oriC region

104076..104437 nt

Browse in NCBI

OriC map

OriC sequences

AAGTGACCTCCTCAGAATAATCCGGCACGCGCCGGAGGCTTCCGCACGCCTGAAGCCCGCCAGTGCACAAAAAATCAGCACCACATACAAAAAAACAACCTCATCACCACCTTCAGGTGCATCCGGTTCTCCCTGTTTTTGATACAAAATACGCCTCAGCGACGGGTAATTTTGCTTATCCACATTTAACTGCAAGGGACTTCCCCATAAGGTTACAACCGTTCATGTCATAAAGCGCCAGCCGCCAGCCTTACAGGGTGCAATGTATCTTTTAAACACCTGTTTATATCTCCTTTAAACTACTTAATTACATTCATTTAAAAAGAAAACCTATTCACTGCCTGTCCTGTGGACAGCCAGAT

AT-rich region

The information of repeat sequences

Motif CGCCAG

Start	P-value		Site
243	2.01e-04	AAGCGCCAGC	CGCCAG	CCTTACAGGG
236	2.01e-04	TGTCATAAAG	CGCCAG	CCGCCAGCCT
58	2.01e-04	GCCTGAAGCC	CGCCAG	TGCACAAAAA
30	3.14e-04	ATCCGGCACG	CGCCGG	AGGCTTCCGC
47	4.84e-04	GGCTTCCGCA	CGCCTG	AAGCCCGCCA

Motif GGTGCA

Start	P-value		Site
257	9.92e-05	AGCCTTACAG	GGTGCA	ATGTATCTTT
116	9.92e-05	ACCACCTTCA	GGTGCA	TCCGGTTCTC

Motif CCTGTT

Start	P-value		Site
279	2.17e-04	CTTTTAAACA	CCTGTT	TATATCTCCT
132	2.17e-04	TCCGGTTCTC	CCTGTT	TTTGATACAA
346	5.08e-04	CACTGCCTGT	CCTGTG	GACAGCCAGA
123	5.08e-04	TCAGGTGCAT	CCGGTT	CTCCCTGTTT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000019	100.0	362	0	0	1	362	1	362	669
pORI00000248	93.664	363	21	2	1	362	1	362	542
pORI00000021	92.308	364	25	3	1	362	1	363	514