DoriC

RefSeq

NC_004998

DoriC accession number

pORI00000021

OriC length

363 nt

OriC AT content

0.5537

The location of oriC region

38880..39242 nt

Browse in NCBI

OriC map

OriC sequences

AAGTGACCTCCTCTGAATAATCCGGCCCGCACCGGAGGCATCTGCACGCCTGAAGCCTGTCGGCGAACAAAAAAAACAGCACTGCATACAAAAAACAACCTAATCATCCACCTTCAGGTGCATCCGGTCCCTCCTGTTTTTGATACAAAACACGCCTCACAGACGAGGAATTTTGCTTATCCACATTTAACTGCAAGGGACTTCCCCATAAGGTTACAACCGTTCATGTCATAAAGCGCCATCCGCCAGCCTTACAGGGTGCAATGTATCTTTTAAACACCTGTTTATATCTCCTTTAAACTACTTAACTACATTCATTTAAAAAGAAAACCTATTCACTGCCTGTCCTGTGGACAGACAGAT

AT-rich region

The information of repeat sequences

Motif GGTGCA

Start	P-value		Site
258	9.27e-05	AGCCTTACAG	GGTGCA	ATGTATCTTT
117	9.27e-05	TCCACCTTCA	GGTGCA	TCCGGTCCCT

Motif CCTGTY

Start	P-value		Site
342	2.27e-04	CTATTCACTG	CCTGTC	CTGTGGACAG
56	2.27e-04	ACGCCTGAAG	CCTGTC	GGCGAACAAA
280	4.26e-04	CTTTTAAACA	CCTGTT	TATATCTCCT
133	4.26e-04	TCCGGTCCCT	CCTGTT	TTTGATACAA
124	5.76e-04	TCAGGTGCAT	CCGGTC	CCTCCTGTTT

Motif GNGVCHTCCBC

Start	P-value		Site
236	3.20e-06	ATGTCATAAA	GCGCCATCCGC	CAGCCTTACA
35	6.68e-06	GCCCGCACCG	GAGGCATCTGC	ACGCCTGAAG
197	7.86e-06	TTAACTGCAA	GGGACTTCCCC	ATAAGGTTAC
3	1.26e-05	AA	GTGACCTCCTC	TGAATAATCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000021	100.0	363	0	0	1	363	1	363	671
pORI00000019	92.308	364	25	3	1	363	1	362	514
pORI00000248	92.011	363	28	1	1	363	1	362	508