RefSeq NC_017950.1
Accession number NC_017950.1
DoriC accession number ORI96010222
OriC length 154 nt
OriC AT content 0.701299
The location of oriC region 1375..1528 nt
Browse in NCBI
OriC map
OriC sequences
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaaCCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnan
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TCCACAG

StartP-valueSite
913.03e-05TCATCACTTTTCCACAGAATACACAGA
614.11e-05CAAGTTAATTTCCGCAGTTTTATTGGT
1009.63e-05TTCCACAGAATACACAGAGACTACTAT
362.01e-04CTCTGTTTTTTCCACAAGTTGTGAACA

Motif SYTGTG

StartP-valueSite
11.05e-04.CCTGTGTATAACTTTT
431.86e-04TTTTCCACAAGTTGTGAACAAGTTAA

Motif AASRAG

StartP-valueSite
1446.50e-05ATAATAAATAAAGGAGAATCC
496.24e-04ACAAGTTGTGAACAAGTTAATTTCCG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010222 100.0 154 0 0 1 154 1 154 0.0 285
ORI96010273 99.351 154 0 1 1 154 1 153 0.0 278
ORI96010182 99.351 154 0 1 1 154 1 153 0.0 278
ORI96010178 99.351 154 0 1 1 154 1 153 0.0 278
ORI96010176 99.351 154 0 1 1 154 1 153 0.0 278
ORI96010174 99.351 154 0 1 1 154 1 153 0.0 278
ORI96010172 99.351 154 0 1 1 154 1 153 0.0 278
ORI94010840 99.351 154 0 1 1 154 1 153 0.0 278
ORI93010564 99.351 154 0 1 1 154 1 153 0.0 278
ORI93010562 99.351 154 0 1 1 154 1 153 0.0 278
ORI93010560 99.351 154 0 1 1 154 1 153 0.0 278
ORI90010298 99.351 154 0 1 1 154 1 153 0.0 278
ORI90010296 99.351 154 0 1 1 154 1 153 0.0 278
ORI96010180 98.052 154 2 1 1 154 1 153 0.0 267