RefSeq NC_009442.1
Accession number NC_009442.1
DoriC accession number ORI90010296
OriC length 153 nt
OriC AT content 0.699346
The location of oriC region 1375..1527 nt
Browse in NCBI
OriC map
OriC sequences
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaaCCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnan
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTTTAAAAAACTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TCCACAG

StartP-valueSite
903.05e-05TCATCACTTTTCCACAGAATACACAGA
604.16e-05CAAGTTAATTTCCGCAGTTTTATTGGT
999.61e-05TTCCACAGAATACACAGAGACTACTAT
351.99e-04CTCTGTTTTTTCCACAAGTTGTGAACA

Motif SYTGTG

StartP-valueSite
11.09e-04.CCTGTGTATAACTTTT
421.94e-04TTTTCCACAAGTTGTGAACAAGTTAA

Motif GGWSWWTC

StartP-valueSite
1454.31e-06AATAAATAAAGGAGAATCC
741.01e-04CAGTTTTATTGGTCTTTCATCACTTTTC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010273 100.0 153 0 0 1 153 1 153 0.0 283
ORI96010182 100.0 153 0 0 1 153 1 153 0.0 283
ORI96010178 100.0 153 0 0 1 153 1 153 0.0 283
ORI96010176 100.0 153 0 0 1 153 1 153 0.0 283
ORI96010174 100.0 153 0 0 1 153 1 153 0.0 283
ORI96010172 100.0 153 0 0 1 153 1 153 0.0 283
ORI94010840 100.0 153 0 0 1 153 1 153 0.0 283
ORI93010564 100.0 153 0 0 1 153 1 153 0.0 283
ORI93010562 100.0 153 0 0 1 153 1 153 0.0 283
ORI93010560 100.0 153 0 0 1 153 1 153 0.0 283
ORI90010298 100.0 153 0 0 1 153 1 153 0.0 283
ORI90010296 100.0 153 0 0 1 153 1 153 0.0 283
ORI96010222 99.351 154 0 1 1 153 1 154 0.0 278
ORI96010180 98.039 153 3 0 1 153 1 153 0.0 267