RefSeq NC_017621.1
Accession number NC_017621.1
DoriC accession number ORI96010180
OriC length 153 nt
OriC AT content 0.686275
The location of oriC region 1375..1527 nt
Browse in NCBI
OriC map
OriC sequences
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaaCCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnan
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
dnaACCTGTGTATAACTTTTCAAAAAAGCTCTGTTTTTTCCACAAGTTGTGAACAAGTTAATTTCCGCAGTTTTATTGGTCTTTCATCACTTTTCCACAGAATACACAGAGACTACTATTACTATTAACCTTATAGATAATAAATAAAGGAGAATCCdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TCCACAG

StartP-valueSite
903.39e-05TCATCACTTTTCCACAGAATACACAGA
604.70e-05CAAGTTAATTTCCGCAGTTTTATTGGT
991.06e-04TTCCACAGAATACACAGAGACTACTAT
352.17e-04CTCTGTTTTTTCCACAAGTTGTGAACA

Motif SYTSTG

StartP-valueSite
241.92e-04TTTCAAAAAAGCTCTGTTTTTTCCAC
11.92e-04.CCTGTGTATAACTTTT
422.80e-04TTTTCCACAAGTTGTGAACAAGTTAA

Motif GGWSWWTC

StartP-valueSite
1454.97e-06AATAAATAAAGGAGAATCC
741.08e-04CAGTTTTATTGGTCTTTCATCACTTTTC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010180 100.0 153 0 0 1 153 1 153 0.0 283
ORI96010273 98.039 153 3 0 1 153 1 153 0.0 267
ORI96010222 98.052 154 2 1 1 153 1 154 0.0 267
ORI96010182 98.039 153 3 0 1 153 1 153 0.0 267
ORI96010178 98.039 153 3 0 1 153 1 153 0.0 267
ORI96010176 98.039 153 3 0 1 153 1 153 0.0 267
ORI96010174 98.039 153 3 0 1 153 1 153 0.0 267
ORI96010172 98.039 153 3 0 1 153 1 153 0.0 267
ORI94010840 98.039 153 3 0 1 153 1 153 0.0 267
ORI93010564 98.039 153 3 0 1 153 1 153 0.0 267
ORI93010562 98.039 153 3 0 1 153 1 153 0.0 267
ORI93010560 98.039 153 3 0 1 153 1 153 0.0 267
ORI90010298 98.039 153 3 0 1 153 1 153 0.0 267
ORI90010296 98.039 153 3 0 1 153 1 153 0.0 267