RefSeq NC_017280.1
Accession number NC_017280.1
DoriC accession number ORI96010688
OriC length 159 nt
OriC AT content 0.773585
The location of oriC region 1324..1482 nt
Browse in NCBI
OriC map
OriC sequences
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaaGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnan
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GRRTGTG

StartP-valueSite
284.15e-05ATAAATTCTAGAGTGTGAAAAAAAGAA
74.15e-05GTGAAAGGATGTGAAAAATAAAT

Motif ACAASS

StartP-valueSite
1473.75e-05TTAAAATAAACCAAGGAGAAAAA
1225.53e-04GCTTATTATTACAACGAATTTAAAAT
1085.53e-04CACAATTTCAACAAGCTTATTATTAC

Motif SAATTTC

StartP-valueSite
1003.89e-05AAGAATTTCACAATTTCAACAAGCTTA
921.06e-04TTGCTTTGAAGAATTTCACAATTTCAA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010654 100.0 159 0 0 1 159 1 159 0.0 294
ORI96010688 100.0 159 0 0 1 159 1 159 0.0 294
ORI94040277 100.0 159 0 0 1 159 1 159 0.0 294
ORI92010341 100.0 159 0 0 1 159 1 159 0.0 294
ORI10010064 100.0 159 0 0 1 159 1 159 0.0 294
ORI96010655 99.371 159 1 0 1 159 1 159 0.0 289
ORI96010656 99.371 159 1 0 1 159 1 159 0.0 289
ORI96010687 99.371 159 1 0 1 159 1 159 0.0 289
ORI70010266 99.371 159 1 0 1 159 1 159 0.0 289
ORI10010008 99.371 159 1 0 1 159 1 159 0.0 289
ORI92240122 98.742 159 2 0 1 159 1 159 0.0 283