RefSeq NC_017279.1
Accession number NC_017279.1
DoriC accession number ORI96010687
OriC length 159 nt
OriC AT content 0.767296
The location of oriC region 1324..1482 nt
Browse in NCBI
OriC map
OriC sequences
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaaGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnan
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif SRATKTSA

StartP-valueSite
839.09e-06TTGATTATTTCGCTTTGAAGAATTTCAC
74.28e-05GTGAAAGGATGTGAAAAATAAATT
282.02e-04ATAAATTCTAGAGTGTGAAAAAAAGAAA
1002.76e-04AAGAATTTCACAATTTCAACAAGCTTAT
923.57e-04TCGCTTTGAAGAATTTCACAATTTCAAC

Motif ACAASS

StartP-valueSite
1474.30e-05TTAAAATAAACCAAGGAGAAAAA
1226.24e-04GCTTATTATTACAACGAATTTAAAAT
1086.24e-04CACAATTTCAACAAGCTTATTATTAC

Motif TWTGAT

StartP-valueSite
724.14e-04AAAATACAAATTTGATTATTTCGCTT
561.14e-03TTAAGCAAAGTATGATAAAATACAAA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010687 100.0 159 0 0 1 159 1 159 0.0 294
ORI96010654 99.371 159 1 0 1 159 1 159 0.0 289
ORI96010688 99.371 159 1 0 1 159 1 159 0.0 289
ORI94040277 99.371 159 1 0 1 159 1 159 0.0 289
ORI92240122 99.371 159 1 0 1 159 1 159 0.0 289
ORI92010341 99.371 159 1 0 1 159 1 159 0.0 289
ORI10010064 99.371 159 1 0 1 159 1 159 0.0 289
ORI96010655 98.742 159 2 0 1 159 1 159 0.0 283
ORI96010656 98.742 159 2 0 1 159 1 159 0.0 283
ORI70010266 98.742 159 2 0 1 159 1 159 0.0 283
ORI10010008 98.742 159 2 0 1 159 1 159 0.0 283