RefSeq NC_009839.1
Accession number NC_009839.1
DoriC accession number ORI92240122
OriC length 159 nt
OriC AT content 0.761006
The location of oriC region 1324..1482 nt
Browse in NCBI
OriC map
OriC sequences
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaaGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnan
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTCGCTTTGAAGAATTTCACAATTTCAACAAGCTTATTGTTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif SRATKTSA

StartP-valueSite
839.91e-06TTGATTATTTCGCTTTGAAGAATTTCAC
75.60e-05GTGAAAGGATGTGAAAAATAAATT
1002.73e-04AAGAATTTCACAATTTCAACAAGCTTAT
282.73e-04ATAAATTCTAGAGTGTGAAAAAAAGAAA
923.59e-04TCGCTTTGAAGAATTTCACAATTTCAAC

Motif ACAASS

StartP-valueSite
1474.55e-05TTAAAATAAACCAAGGAGAAAAA
1226.38e-04GCTTATTGTTACAACGAATTTAAAAT
1086.38e-04CACAATTTCAACAAGCTTATTGTTAC

Motif TWTGAT

StartP-valueSite
724.25e-04AAAATACAAATTTGATTATTTCGCTT
561.16e-03TTAAGCAAAGTATGATAAAATACAAA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI92240122 100.0 159 0 0 1 159 1 159 0.0 294
ORI96010687 99.371 159 1 0 1 159 1 159 0.0 289
ORI96010654 98.742 159 2 0 1 159 1 159 0.0 283
ORI96010688 98.742 159 2 0 1 159 1 159 0.0 283
ORI94040277 98.742 159 2 0 1 159 1 159 0.0 283
ORI92010341 98.742 159 2 0 1 159 1 159 0.0 283
ORI10010064 98.742 159 2 0 1 159 1 159 0.0 283
ORI96010655 98.113 159 3 0 1 159 1 159 0.0 278
ORI96010656 98.113 159 3 0 1 159 1 159 0.0 278
ORI70010266 98.113 159 3 0 1 159 1 159 0.0 278
ORI10010008 98.113 159 3 0 1 159 1 159 0.0 278