RefSeq NC_013199.1
Accession number NC_013199.1
DoriC accession number ORI94010702
OriC length 173 nt
OriC AT content 0.624277
The location of oriC region 1351..1523 nt
Browse in NCBI
OriC map
OriC sequences
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaaTCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnan
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTTTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TCCACWKKTKSAHMACTBC

StartP-valueSite
512.58e-10CTATCACTTATCCACAGGTGCATAACTTCATGATTTGCT
12.58e-10.TCCACTTGTGGACAACTGCCAGAAACAGA
941.73e-09CGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTAT

Motif ASGASG

StartP-valueSite
1634.17e-05AACGACGTACAGGAGGCTCTT
1542.77e-04TATATATAAAACGACGTACAGGAGGC

Motif CAGAAM

StartP-valueSite
262.11e-04CTGCCAGAAACAGAACTTTTTGTCCC
204.84e-04GGACAACTGCCAGAAACAGAACTTTT
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010120 100.0 173 0 0 1 173 1 173 0.0 320
ORI94010702 100.0 173 0 0 1 173 1 173 0.0 320
ORI96010115 99.422 173 1 0 1 173 1 173 0.0 315
ORI93010585 99.422 173 1 0 1 173 1 173 0.0 315
ORI94010712 85.38 171 24 1 3 173 3 172 1.4013e-45 176
ORI40010229 85.38 171 24 1 3 173 3 172 1.4013e-45 176
ORI92510434 84.795 171 25 1 3 173 3 172 6.72623e-44 171
ORI96010308 83.626 171 25 2 3 173 3 170 5.26e-40 158
ORI96010110 83.626 171 25 2 3 173 3 170 5.26e-40 158
ORI96010108 83.626 171 25 2 3 173 3 170 5.26e-40 158