RefSeq NC_013198.1
Accession number NC_013198.1
DoriC accession number ORI93010585
OriC length 173 nt
OriC AT content 0.618497
The location of oriC region 1351..1523 nt
Browse in NCBI
OriC map
OriC sequences
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaaTCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnan
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
dnaATCCACTTGTGGACAACTGCCAGAAACAGAACTTTTTGTCCCTATCACTTATCCACAGGTGCATAACTTCATGATTTGCTGTTCCGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTATTACTCTAAAAGCTTTATATTATATATATAAAACGACGTACAGGAGGCTCTTdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TCCACWKKTKSAHMACTBC

StartP-valueSite
512.73e-10CTATCACTTATCCACAGGTGCATAACTTCATGATTTGCT
12.73e-10.TCCACTTGTGGACAACTGCCAGAAACAGA
941.80e-09CGCAAAGTTATCCACAGTTTGAACACGCCCTATTACTAT

Motif ASGASG

StartP-valueSite
1634.17e-05AACGACGTACAGGAGGCTCTT
1542.85e-04TATATATAAAACGACGTACAGGAGGC

Motif CAGAAM

StartP-valueSite
262.21e-04CTGCCAGAAACAGAACTTTTTGTCCC
204.99e-04GGACAACTGCCAGAAACAGAACTTTT
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010115 100.0 173 0 0 1 173 1 173 0.0 320
ORI93010585 100.0 173 0 0 1 173 1 173 0.0 320
ORI96010120 99.422 173 1 0 1 173 1 173 0.0 315
ORI94010702 99.422 173 1 0 1 173 1 173 0.0 315
ORI94010712 84.795 171 25 1 3 173 3 172 6.72623e-44 171
ORI40010229 84.795 171 25 1 3 173 3 172 6.72623e-44 171
ORI92510434 84.211 171 26 1 3 173 3 172 3.14031e-42 165
ORI96010308 83.041 171 26 2 3 173 3 170 2.45e-38 152
ORI96010110 83.041 171 26 2 3 173 3 170 2.45e-38 152
ORI96010108 83.041 171 26 2 3 173 3 170 2.45e-38 152