RefSeq NC_008526.1
Accession number NC_008526.1
DoriC accession number ORI40010229
OriC length 172 nt
OriC AT content 0.651163
The location of oriC region 1431..1602 nt
Browse in NCBI
OriC map
OriC sequences
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaaTGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnan
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAACCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATATAAAAGACGTTCAGGAGGCTCTTdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CACANGTKSAWMACBYTC

StartP-valueSite
35.08e-09TGCACATGTGGATAACCTTCAAAAACAAAC
531.62e-08CGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTG
1533.03e-08ATATATATAAAAGACGTTCAGGAGGCTCTT
965.58e-08CAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATT

Motif CMGTYG

StartP-valueSite
396.40e-05ACCATTTTATCCGTCGCACTTATCCA
723.87e-04ATAACTTTCTCAGTTGTTGTTTCTCA

Motif AAAARC

StartP-valueSite
1292.58e-04CTATTACTTCAAAAGCTTTATATTAT
218.64e-04GATAACCTTCAAAAACAAACCATTTT
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI94010712 100.0 172 0 0 1 172 1 172 0.0 318
ORI40010229 100.0 172 0 0 1 172 1 172 0.0 318
ORI92510434 99.419 172 1 0 1 172 1 172 0.0 313
ORI96010308 98.256 172 1 1 1 172 1 170 0.0 300
ORI96010110 98.256 172 1 1 1 172 1 170 0.0 300
ORI96010108 98.256 172 1 1 1 172 1 170 0.0 300
ORI96010120 85.38 171 24 1 3 172 3 173 1.4013e-45 176
ORI94010702 85.38 171 24 1 3 172 3 173 1.4013e-45 176
ORI96010115 84.795 171 25 1 3 172 3 173 6.72623e-44 171
ORI93010585 84.795 171 25 1 3 172 3 173 6.72623e-44 171