RefSeq | GCF_000178495.2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Accession number | NZ_CP029003.1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Lineage | bacteria, proteobacteria, gammaproteobacteria, pasteurellales, pasteurellaceae, actinobacillus. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
DoriC accession number | ORI97019976 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC length | 449 nt | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC AT content | 0.728285 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
The location of oriC region | 1929320..1929768 nt | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Browse in NCBI | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC map | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC sequences |
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidaATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
gidAATATCTGCCTTTATAATTTTTATATTCTGAGTAACTGAAACAAAAGAGTGCTATTCTACCTCAAAATTACAGGATCGTGAAAACGCAATTTTAAGATCGTTTATTCGATCCGAAAGAAGATCCGATGATCGCTAATTATCATATAGATCTATATATAGAGATCTTTATTATTGTTATTATTAGAGAGATCCTTTTATGAGGATAACTCTATATTTTTAAATAAAATCAAAAAGTTAGCGTAACTTAAAATCGATAAAGATCTTGTATTTTCAACAGATCTAATTTGTGGATAAATCTAATAGTTATCCACAGGTGAAGCATTTTATCAAGTTATTAATGAATAGATCTCAAGTTGTCAGGCGATAATCTACTGAATTATCCACAGATAAAATAATTAATTTTATGCTGATTTAATAAACAAAACGGCGTAATATAAAGCGTATTTAAGA-
5'-DnaA box-3'
3'-DnaA box-5'
Spacer
DnaA-trio
ATP-DnaA box
AT-rich region GATC   CtrA binding motif Fis binding site IHF binding site |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
The information of repeat sequences |
Motif RTTWTCHRCAGAT
Motif GATCSK
Motif TCTRCCT
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Distribution of genes on leading or lagging strand | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Distribution of nucleotide on leading or lagging strand | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
The result of BLAST |
Download
|