DoriC

RefSeq

NZ_CP007140.1

DoriC accession number

aORI10010373

OriC length

668 nt

OriC AT content

0.3623

The location of oriC region

813701..814368 nt

Browse in NCBI

OriC map

OriC sequences

TGTCATCACCGATTTTAGTTCCAGTGGAAATAAAACTCCCATACATTATTGGGGTACATTAATCAGATTTTACTGATACAGGCATGTTGAAATCGAACATGTTTTTATAGACATACGTGCAATTATCTCCTAAGTTTAGGAACCACTGTTATGATCTTTTCCACCCGAAGCACTGGACACAGTGGAAAGCCAACCAATCTAGGATGAAGAGTTTATATCCTTTGTTTGTCATGAACCTGTCCAAATGGGATATCGGTTTCCACTGGATAAGCAAGGTGCTCCAAAGGAAATTTGGAACATCCAATGAACAGAAATGAACACCAGATTTTACAAAGGTAAAGCAAACATAAATCGGCATATACAATTTCCACTGAAAGAAAAATGAACATAAATGTCTATCCAATATAGTGCATTAGTGTCCCATTCTAAGCATTGGAGTTAAACTAAAGAATTTGATAAACCCATATAGTTAAACAGAATTGTAGCCCCAGGGGGTTTTATTTCCACTGGAACCGGGAAATGGCTACACCCAGTGTCTCGTCTTCTTTTGGTGAAAACACTCCCATTTTTTCTACGTCTTTGGCTTTTAATATTTTGCATGAACAATGTTCATATAGCTCATGAGGATTTAAATAATTATGAATAGAGCAATAGATATTTGCTCGATT

ORB AT-rich region

The information of repeat sequences

Motif TTTCCACTGGA

Start	P-value		Site
501	1.94e-07	GGGGGTTTTA	TTTCCACTGGA	ACCGGGAAAT
257	1.94e-07	GGGATATCGG	TTTCCACTGGA	TAAGCAAGGT
365	1.24e-06	GCATATACAA	TTTCCACTGAA	AGAAAAATGA
18	1.46e-06	ACCGATTTTA	GTTCCAGTGGA	AATAAAACTC
158	1.70e-06	GTTATGATCT	TTTCCACCCGA	AGCACTGGAC

Motif ACWCCCAKTKTYTCKWCKTCTTTKGST

Start	P-value		Site
526	2.34e-15	GGAAATGGCT	ACACCCAGTGTCTCGTCTTCTTTTGGT	GAAAACACTC
559	1.33e-14	TGGTGAAAAC	ACTCCCATTTTTTCTACGTCTTTGGCT	TTTAATATTT

Motif ATGAACA

Start	P-value		Site
599	1.23e-04	AATATTTTGC	ATGAACA	ATGTTCATAT
382	1.23e-04	TGAAAGAAAA	ATGAACA	TAAATGTCTA
314	1.23e-04	ATGAACAGAA	ATGAACA	CCAGATTTTA
304	1.23e-04	GGAACATCCA	ATGAACA	GAAATGAACA
231	1.91e-04	TTTGTTTGTC	ATGAACC	TGTCCAAATG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
aORI10010373	100.0	668	0	0	1	668	1	668	1234
aORI10010108	79.346	489	77	20	158	634	156	632	322
aORI10010078	78.261	460	90	10	158	612	93	547	287