DoriC

RefSeq

NC_015954.1

DoriC accession number

aORI10010247

OriC length

2450 nt

OriC AT content

0.5633

The location of oriC region

2154285..2156734 nt

Browse in NCBI

OriC map

OriC sequences

ATTGCCACCTTCCCCGCTCTCCGTCGCCGAGGGGGATGTTGTGTTGGAGTAGCGCCGGCGACATACTTAACTATGGCGTCAGACAGAATCGATTTCGTCGGGGACGGCGTCGACACAGCGGACTTCGCGTCGGCGGAAGACAACCGATTGTTTCTCGACGGAGCCTCGAGGACCAGAACACATCATGTCGAGTAATTGTCTTTATTTAGACTCTGCACGGGAAACAAGGGAGGTGCTCGGTCGCTGCGGTTATTTCGAGCGGAAAAACACCGGTGAACTACCCCTGCCTACTCAGCCGCTGACGCGGCTTCCTTGAGGCAGGGGCTTCCTGCTTCCACGACGTGACTTGCAGATACATTCTGCGTATCCACAGCGGTCACAGTCTTCACAGGCATCTCTTCGGAGTGAACCACTCCTAGTTTCGATAGCCCGCGCGCCAGCACGTTCAACGACGCGTTCCAATCCCGGTCGAGTTCGAACCCACATGACGGACACGAATGCTCGCGTACCCATACTGGCTTGCGTGTCTCCACGCCACACGACGAACACTCTTTGGTCGTCCCACGTGGGTTGATCTCCTCGACGTGACACGCGTTCTTGTCACCGTGATGTTCGAGGATAGTGATGAAGTCACGCCACCCCACTTCAGCCTTATTCCGCGCGTTCCCCGGGCCTTCAAGCATCCCACGAACGTTCAAGCCTTCGACGAACACGGCGTCGTACTGGCTCGTGTAGAAGTGCGCGAGTTTGTGCTTGAAGTCCTGCTTCTTCGCGGTCATCCGAGCGTGAACCGTGGCGACTCAGCGGCGTTGTTTCTTCCAATTGTTCGAGCCTTCTTGTTTGCGCGAGAGTGAGCGGTGCTCGCGTTCAAGACGCTCGCGGTCAGCCGATAGGTCAAGTCGTCCAACAGAGCGACCATCCGAGTCGTGAACGAAGTTCAACACACCGAGGTCAAGACCCACGGTGTCACCAGGGGTAATGTCCTCTACATCTGGTTTCTCGGGTTCGTCTGTTTTGATGCAGAATGAGACGTACCACGCGCCCGTAGGCTCTTTCTTGAGCGTGACTTCTTTGATTTGCTCGTGGTCTGGAAGGTCTCGATGGAGACGAATTGGGATTTCGCGGGTTTCGCCTTTGAGTTTCTTGAGGACGAGGAGTCCACGTCCGTCTGGGCCACTCTTCTTGTCGAGTTCGAAGCCTGATTGTCGGTACGTGAAACTCCGGTATTCTCGTGGTTTCTTCCATTTCAACGACCCCACGTCGTATCCTTTGGCTTTGAGTTTCCCGAGGTTCTGGATGTTGTCTCGGATTCGCTCGATGGCTTTCTGGAGGACCGTGGAGTAGACGTGTTTCAGGTCGGACCACCAATCTTTCATCGCAGGGAGCGTGTCGCGGACGCTCCAGACGCGTTGACGGAGCGTGCCTGCGTCGTCGGGGATGTTGTTGAATTCGCGGAGACCGTGGTTGTACACTTGTCGTACGGTGTTTCGTGTCCAGTCCATCGCTTCGCGTTGCACTGTCGTGGGAAGCAAGCGGAAGCGAGGGCTGTACATCATACGATGTGTCTATAATTACGACATATTCCATGGTAAAGATTCTGGTTTGTCGTGTTTGAGATTCGTGCGGGTGCCGTATCCCCGCCCTACTCGCTTGGCTTCGCCTCGTCCTTGAGGACGGGGCTTGGCACCCTCACCGCAACCACTAAAAGCTGCCGATGGGACTGTTTCCCGTCGAATCGGTCGCTGCAGACGACTGCGGAACACCCCCACCCCCTCGTTTCAGGTGGAGACGGGAGACCACGGGGGTGGGGGCACCGAGCTCACGCGTGATCGGTAACCCACACAACATCAACCCATCCAAAACAGCAGACGCTTACTGCAGTACGGACTAATCTAACGCCTGTTGTACTAAAACTACCGGTTACGTAGAGGCAGTTTTCGCCGTCAGTTGACCCCCACCCCCACCTGCTAGCCGGTTTCCACCCGAAACGAAGGGGTGGGGGGTTGCAGCACCGTTCGACCGTTTCCGCTCGAGACACACCCTCCACCAGCGCAGCTTTGCAGCTCAAAACTCGTCGATTCAGCGGGCCGCAGTTAAGAAAGCCCCACGCAGACGCTTTTCGGTCTATTCTTCAGAATTCATCCCTGATCGTCGGCAGCCCGATCAAGCTGAGCGTGGCAAAAATTCAGCACCCCCGTTCCACGTGAAACCTCGGCATCCCCCCTTCATTACCCGTGGAATGCCACCTCGACCAGCGACAAATCGCCGCTGATAGGAACAACTCGGGAGCACAAGGATAGATTTTTATCGCACCTCTTCTTTTGCTTCGACTGCATCAACTGGACGGCACCTCGCGGCAGATTAGCGTCAAACCGGCGATTACGTCGCTTACAGCTGTCTTAACCCCGATACGGGGGCCGCTCTCCAGTCGAAACGAAGGGGTTCCACAC

ORB AT-rich region

The information of repeat sequences

Motif TYTCCACGCGAAACGAVGG

Start	P-value		Site
1976	7.45e-11	TGCTAGCCGG	TTTCCACCCGAAACGAAGG	GGTGGGGGGT
2422	3.75e-10	CGGGGGCCGC	TCTCCAGTCGAAACGAAGG	GGTTCCACAC
212	3.49e-09	TTATTTAGAC	TCTGCACGGGAAACAAGGG	AGGTGCTCGG
527	6.30e-09	GGCTTGCGTG	TCTCCACGCCACACGACGA	ACACTCTTTG
2197	1.41e-08	CAGCACCCCC	GTTCCACGTGAAACCTCGG	CATCCCCCCT

Motif TCKNGTBTBTCGBSTTTGAGTTTCTYGAGG

Start	P-value		Site
1120	1.29e-14	AATTGGGATT	TCGCGGGTTTCGCCTTTGAGTTTCTTGAGG	ACGAGGAGTC
1597	2.55e-13	TGGTAAAGAT	TCTGGTTTGTCGTGTTTGAGATTCGTGCGG	GTGCCGTATC
1261	5.90e-12	CGACCCCACG	TCGTATCCTTTGGCTTTGAGTTTCCCGAGG	TTCTGGATGT
1057	5.88e-11	AGGCTCTTTC	TTGAGCGTGACTTCTTTGATTTGCTCGTGG	TCTGGAAGGT
991	6.20e-11	GTCCTCTACA	TCTGGTTTCTCGGGTTCGTCTGTTTTGATG	CAGAATGAGA

Motif AAGSBBTCGAYGVAGACGACTTCGBA

Start	P-value		Site
1092	2.21e-12	CGTGGTCTGG	AAGGTCTCGATGGAGACGAATTGGGA	TTTCGCGGGT
1734	6.51e-12	TTTCCCGTCG	AATCGGTCGCTGCAGACGACTGCGGA	ACACCCCCAC
697	2.50e-11	ACGAACGTTC	AAGCCTTCGACGAACACGGCGTCGTA	CTGGCTCGTG
104	9.32e-11	TTCGTCGGGG	ACGGCGTCGACACAGCGGACTTCGCG	TCGGCGGAAG

The result of BLAST

Download

subject_id	identity	aln_length	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010247	100.0	2450	1	2450	1	2450	0.0	4525
aORI10010137	100.0	30	1977	2006	251	222	6.98e-09	57
aORI10010009	100.0	30	1977	2006	227	198	6.98e-09	57