DoriC

RefSeq

NC_017322.1

Accession number

NC_017322.1

DoriC accession number

ORI96000388

OriC length

405 nt

OriC AT content

0.483951

The location of oriC region

3275761..3276165 nt

Browse in NCBI

OriC map

OriC sequences

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemeTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif AAAATMAA

Start	P-value		Site
19	8.65e-06	TCCTAATCTA	AAAATAAA	ACTGAATTTA
77	1.79e-05	ATCAAGGATT	AAAATCAA	TCCTCATCCT

Motif CTTDTCMACWKRCC

Start	P-value		Site
269	1.01e-08	GGCCATGAGT	CTTGTCCACATGCC	CGGGCAAGAG
329	5.01e-08	CAAGTCGCCG	CTTTTCCACTTGCC	TGAAGCCAGG
380	1.12e-07	TTTGTCCCGC	CTTATCAACAGACC	GCGGAGAATT

Motif AAACMC

Start	P-value		Site
173	1.71e-04	AAACCCGGTA	AAACAC	TGCAGAGTCA
163	3.54e-04	GTAAGCGGGG	AAACCC	GGTAAAACAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI96000389	100.0	405	0	0	1	405	1	405	0.0	749
ORI96000388	100.0	405	0	0	1	405	1	405	0.0	749
ORI94030382	100.0	405	0	0	1	405	1	405	0.0	749
ORI10030017	100.0	405	0	0	1	405	73	477	0.0	749
ORI96000439	98.272	405	7	0	1	405	1	405	0.0	710
ORI92030162	83.455	411	56	8	1	405	1	405	0.0	372
ORI96000428	75.735	408	75	21	10	405	11	406	0.0	183