DoriC

RefSeq

NC_003047.1

Accession number

NC_003047.1

DoriC accession number

ORI10030017

OriC length

477 nt

OriC AT content

0.467505

The location of oriC region

1..477 nt

Browse in NCBI

OriC map

OriC sequences

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemeCAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemECAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTTGCGATGCGTTTCGCTCACTTGCCGCTTCCTAATCTAAAAATAAAACTGAATTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGTCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCGGTAAGCGGGGAAACCCGGTAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCTGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif AARRATWAAAMTSAAT

Start	P-value		Site
90	5.00e-10	TTCCTAATCT	AAAAATAAAACTGAAT	TTATAAGGTT
142	2.13e-09	GGTGGGTATC	AAGGATTAAAATCAAT	CCTCATCCTA

Motif TYDTCCACWTGCC

Start	P-value		Site
342	7.24e-08	GCCATGAGTC	TTGTCCACATGCC	CGGGCAAGAG
402	1.18e-07	AAGTCGCCGC	TTTTCCACTTGCC	TGAAGCCAGG
65	2.68e-06	GCGATGCGTT	TCGCTCACTTGCC	GCTTCCTAAT
258	2.95e-06	CACTGCAGAG	TCAGCCCCTTGCC	GGCGATCGGG
453	6.17e-06	TTGTCCCGCC	TTATCAACAGACC	GCGGAGAATT

Motif AGAGATT

Start	P-value		Site
361	4.93e-05	TGCCCGGGCA	AGAGATT	TCCGGTTAGG
202	4.93e-05	AAGAGGCGGG	AGAGATT	CCGGCCGAAT

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI10030017	100.0	477	0	0	1	477	1	477	0.0	881
ORI96000389	100.0	405	0	0	73	477	1	405	0.0	749
ORI96000388	100.0	405	0	0	73	477	1	405	0.0	749
ORI94030382	100.0	405	0	0	73	477	1	405	0.0	749
ORI96000439	98.272	405	7	0	73	477	1	405	0.0	710
ORI92030162	83.455	411	56	8	73	477	1	405	0.0	372
ORI96000428	75.735	408	75	21	82	477	11	406	0.0	183